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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACCCATCTAGCAATTAGTCATTTGGATGTAAATAAGATTAATgtaagaaacagttttattgtttatagttaatttttttcaccaacattgagcatttaatgataattttccctgtgatgtgacaaatggtttaatgcttctgcag

Basic information

species Glycine max
transcript GLYMA01G02840.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G02840.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0313g00020.t01 (Vitis vinifera), 5'ss of exon 11
CAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACCCATCTAGCAATTAGTCATTTGGATGTAAATAAGATTAATgtaagaaacagttttattgtttatagttaatttttttcaccaacattgagcatttaatgataattttccctgtgat--gtgacaaa-tggtttaatgcttctgcag----------------------------------------
||| || || |||||||||||| | || || |||||||| || |||||||| || ||||||||  | ||||||||||| |||||||| |||||||| |||||||| |  | | |   |  |  |  |  |  |   | | ||   ||     | | |  | |  || | ||   ||  ||| |||| | |||   ||| ||||                                           
CAAGTTCACTGTGAATGTTGTGAGAAATCTCAGTCAAAAGACTCATTGGCGTATTAAAACCCACTTGGCAATTAGTCACTTGGATGTTAATAAGATCAATgtaaggattaatctggattctcttcttggaaataaattatca-tgttacctttgttaacagagattgctctagaatctgtgtcaaaatagttgggtgcctctgatctttctttgttaaaatagttggctgcctcttttctttgcag

upper sequence: GLYMA01G02840.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ28057 (Selaginella moellendorffii), 5'ss of exon 6
CAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACCCATCTAGCAATTAGTCATTTGGATGTAAATAAGATTAATgtaagaaacagttttattgtttatagttaatttttttcaccaacattgagcatttaatgataattttccctgtgatgtgacaaatggtttaatgcttctgcag
||| || || ||||  || ||  ||||||||||||| |||||||| |||||||||||||| || || || || |||||||| || |     |||||    |||||      |||||   |  | ||   ||||     ||  |  || ||  |    ||  |                                         
CAAGTTCACCGTGAGCGTCGTTAGGAACCTTAGTCAGAAAACACACTGGCGAATCAAAACGCACCTGGCCATCAGTCATTTAGACGCTGGAAAGATAGCCgtaagtgttgtttttac--tccacagc--atttcagggactcat-tttagtgtcctctggcag----------------------------------------