1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCTGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttagaatcttatattgctactttttggaaattggaagtttttaaaccgagggaaagaaatgaagagggatgggatggtggggtcattatttcct...
species | Glycine max |
transcript | GLYMA01G01740.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAG GAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGEST: gi|22932747|gb|BU549886.1|BU549886
genomic: GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttag ... tgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
EST: TGATTATGAGCAGCTAGTCTCNNNGAATTCAGCTCTCAAG GAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGEST: gi|193482301|gb|FK445734.1|FK445734
genomic: TGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttag ... tgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
EST: GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAG GAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
genomic: GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttag ... tgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCTGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttagaatcttatattgctactttttggaaattggaagtttttaaaccgagggaaagaaatgaagagggatgggatggtggggtcattatttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC