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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGATCTATGAGACATATTGTGTCACCTTCAGTTGCTGATGGTGCCTTTCATTATTATGAGAAGATATCCTTTCAGTTGTTTTTCATGACGCAGGAGgtaggatgtgtgttcgaccatttgaaaaggattgtgacagtggaatactgatgttgcccttataataatttttgcag

Basic information

species Glycine max
transcript GLYMA01G00380.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00380.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G58100.1 (Arabidopsis thaliana), 5'ss of exon 17
GTGGGGATCTATGAGACATATTGTGTCACCTTCAGTTGCTGATGGTGCCTTTCATTATTATGAGAAGATATCCTTTCAGTTGTTTTTCATGACGCAGGAGgtaggatgtgtgttcgaccatttgaaaaggattgtgacagtggaatactgatgttgccc-----ttataataatttttgcag--------------------
 |||||||| |||||||||||  | || || ||||||||||||||||| |||||| ||||||||||||| || |||||| |  | ||||| || || |||||| | | | ||| | |    |  |||||  ||   |    | ||  |  || |||         ||| || | | ||  |                     
CTGGGGATCCATGAGACATATAATATCCCCATCAGTTGCTGATGGTGCATTTCATCATTATGAGAAGATCTCTTTTCAGCTTGTCTTCATCACCCAAGAGgtatgttct-tgt-caaatgctctaaaagatttcccatcaggtaaagcatattttggttaaaaactatgattaatcttataatctaaaagtcttaaggataa

upper sequence: GLYMA01G00380.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0070g00370.t01 (Vitis vinifera), 5'ss of exon 17
GTGGGGATCTATGAGACATATTGTGTCACCTTCAGTTGCTGATGGTGCCTTTCATTATTATGAGAAGATATCCTTTCAGTTGTTTTTCATGACGCAGGAGgtaggatgtgtgttcgaccatttgaaaaggattg--------tgacagtg------gaatactgatgttgcccttataataatttttgcag
|||||| ||||||||||| ||| | ||||||||  |||||||||| || || |||| |||||| |||||||| |||||||||||||| || || ||||||||| ||||| |     |  | ||  |  |||||         |||  |||      ||| |  ||| ||     || | | |||  |||||
GTGGGGCTCTATGAGACACATTATATCACCTTCCATTGCTGATGGGGCTTTCCATTTTTATGACAAGATATCTTTTCAGTTGTTTTTTATCACTCAGGAGgtatgatgtttaacttatgagtttgaggggattccataagcttgatggtgtaaagtgaaaagggatattcagtctaaatttattgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311526|gb|BG405177.1|BG405177
EST:     TTCATTATTATGAGAAGATATCCTTTCAGTTGTTTTTCATGACGCAGGAG                         AAAGTTAGGCACATTAAACAGCTTCCTGTGGATATGAAGGCTATAATGGAT
genomic: TTCATTATTATGAGAAGATATCCTTTCAGTTGTTTTTCATGACGCAGGAGgtaggatgtg ... atttttgcagAAAGTTAGGCACATTAAACAGCTTCCTGTGGATATGAAGGCTATAATGGAT