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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTAGCAACCTTCAGCCCTTTTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacgtaggttcccgtagaattatggtttactttttcttggtgatatatttcccccctaaaatgttgtctttgcttatagtagctacacaaagcatttctttttcatctttctactaaacaaattctggccag

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 10
GGACGTAGCAACCTTCAGCCCTTTTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgt---acgtaggt------tcccgtagaattatggtttactttttcttggtgatatatttccccc--ctaaaatgt-tgtctt--tgcttatagtagc-tacacaaagcatttctttttcatct----ttctactaaacaaattctggccag-
|| ||||| |||| |||||  |||| |||||||||||| |||||  |||||||||| ||||| ||||| || |||||||| || || || ||   || ||  |      |    |  | ||| |||     | |||||  |   |||||| |||   ||| |   | |  |||  || ||||  || | |  |     |||| ||   |   ||    |||| ||  |  || | ||   |  
GGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTTGCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGgttttacttacttgaaatgttatcttcatttagggtagtactgttctttatttcatatttaccctgactatagcatctaacttactgtttattttatcctgtatccctcattcctcccttgcctgctcttcttctggatgaaatatgttaaag

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 10
GGACGTAGCAACCTTCAGCCCTTTTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacg--taggttcccgtagaattatggtttactttttcttggtgatatatttcccccctaaaatgttgtctttgcttatagtagctacacaaagcatttctttttcatctttctactaaacaaattctggccag
|| || ||    |  || || ||||| || ||||| ||||||||  |||||||||||||||| ||||||||||||||||| || || || |||    |  ||||| || ||| |   |||| ||  | | ||  | |  | |   |||| | ||||   |   ||  ||| |||  || | ||||  ||  || || || | | |  |      | | |||  ||
GGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatactttagttcctgt-gaacttcagttttctgat-catgaagctcaagtattccccaagaatgacatgactgtctat-gtaattaaataaag--ttatttatttatttatattttttggtgactatggtaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294241|gb|FG986330.1|FG986330
EST:     ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAA                         GGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT
genomic: ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacgtaggt ... ttctggccagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT
EST: gi|7692762|gb|AW760861.1|AW760861
EST:     ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAA                         GGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT
genomic: ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacgtaggt ... ttctggccagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT