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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGgtagaattttgagcttcattgaatcattttcttttagaacatttctaaatattcatattcttgcattttttgtgacag

Basic information

species Glycine max
transcript GLYMA20G25800.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGgtagaattttgagcttcattgaatcattttcttttagaacattt----ctaaatattcatattcttgcattttttgtgacag--------------------
|| || ||  || | ||  | ||||| || |  |||||||| || ||||| || || ||||||||||| |||||||| ||||||||||| ||||||||||||      | |   |  | | ||| | | |   ||  || | ||    ||| | | |||  |    |  ||  |  |||                       
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
ACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGgtaga---attttgagcttcattgaatcattttcttttagaacatttctaaatattcatattcttgcatt--ttttgtgacag--
|||||||||||||| || ||| | ||  | |  |||||||| |||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||     | |||     |||   |     |   ||||||   |  |  |  ||    | ||  |  |||  ||||||       
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatgtatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgtattttag

upper sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
ACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGgtagaattttgagcttcattgaatcattttcttttagaacatt---tctaaatattcatattcttgcattttttgtgacag
||||||||||| || || ||||||||||| | |||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| | |  ||| ||    |  ||||| || |||| |     | | | |  | |   |  | ||| |||  |  |||
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgt-ggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttgattccag