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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGACAAGTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCTGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgactgctagttattttgattttgacggtttaagcttcattttgagtagttctattgaggaagtaaaccctcatcttgttattttcaaaaataga...

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 9
CAATGACAAGTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCTGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgactgcta----------gttattttgattttgacg-gtttaagcttcattttgag----tagttctattgag-gaagtaaaccctcatcttgtta-----ttttcaaaaataga-----------------------------------------------------------------
 | ||| |  |   | | |     |||||||||||||||||||||||||||  | ||  |||| || |||||  | | ||| ||||| ||||| || ||||| || |  |  |             | || |  |  |  |   | |  | ||  |||| ||       |||| ||||   ||||      |  | | ||||     |  | || |||  |                                                                 
AAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGgtatgcggttcttgtcatgcctccacttttctattcctttcatatctttgtttgtttttaagatcccgattctcttgaataaagttctatttactatagttaagagttcctaaagaatcaacacctttgtttttcatagtgggtcttgttttcatgatctctcattacaaacctacatttttacag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 3
CAATGACAAGTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCTGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgactgctagttattttgattttgacggtttaagcttcattttgagtagttctattgaggaagtaaaccctcatcttgttattttcaaaaataga-
 |||||||||||    | || || |||| | || |||||||| |||||||||||||| |||||||| |||||  | | ||||||||| ||||| |||||||| ||||| |     ||    |  ||||  |  || |   || | |     |  | |  |||| | |   | ||   |      |   | || |  |    
GAATGACAAGTTCTCCTTTAGCATATACTTGTGCTATTTGGTGTATGCACCACTTTACATTGCTGGGCCAATTGTCAGCTTCAATGCTTTTGCTTCACAGgtctgtgaatttcttttggaattcttttc-cttttcatttttgaatcattatgttccatttgaagcatatagccaataatagtctgcatgcagaggttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208331653|gb|GE132366.1|GE132366
EST:     ATACTGAACTTCTAATGCC-TTGCCNCACAG                         ATAGATGTTCCTCAAAACACTAATTCAGTTAGAAATGTGACACTCAATGGT
genomic: ATACTGAACTTC-AATGCCTTTGCCTCACAGgtttgtgact ... atttttgcagATAGATGTTCCTCAAAACACTAATTCAGTTAGAAATGTGACACTCAATGGT