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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaaatactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaag

Basic information

species Glycine max
transcript GLYMA20G24820.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 8
TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaaatactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaag
|| |||||||| ||||| |||| |||||||| || || ||||||||||| ||||| || || || |||||||||||||||||||||||| ||||||| | || ||| || | | | | | || ||| | | |||| | | | | || || |||| || | ||| | | | || | |
AACTGCTGTGAGGGCATATTCAAAGCAGCTTTTCATCGCCCTGAAGCATCTGAAAAACTGCAAAGTGCTGCACTGTGATATAAAGCCAGATAATATGCTGgtatg----atat-ctggcttgcc-atact-tcttttctcacactagcatttgctcttgttttttggccat-tcggttttgtagaa----gttttgtcactatctacataaa----

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 8
TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaa--atactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaag
|| ||||| || ||||| || ||||||||||| |||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||| | | || ||||| || ||| || ||| | || | |||| |||||| | || |||| | | || | | | | ||| |||||||
AACTGCTGTAAGGGCATATGCTAAACAGCTTTTCATTGCTCTCAAGCATCTTAGGAACTGTGGCGTTCTGCATTGTGATATAAAGCCAGATAATATGCTGgtaggttttaagtatacttttatgtccag-ttgcctgcctt-agttttttatttgtt-------ataataaat-tttgcattgaattttactatatattcattgcctctttcag----

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S250_28V6.1 (Physcomitrella patens), 5'ss of exon 7
TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaaatactgt-----tgtgt---------ttagattgtttcttttcaa---aattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttca----atttcctcttttgacaag---------------------------------------------------------
|| || || |||| || ||||||||| | ||||| ||||| || ||| | ||||||||||| ||| | || || || || ||||| ||||||||||||||||| || | | | | ||| |||| ||| | | | ||| || ||| | | | | || | | ||| || | | |||| ||||| |||
GACTGCAGTCCGAGCTTATGCAAAACAGTTATTTATCGCTCTCAAACATTTGCGGAACTGTGGAGTTTTGCACTGCGACATCAAGCCTGATAATATGTTGgtatgttaaatgtgttttctacgtatgtgcaacagagctagagtgtagagcgtacagtgagtttagtggacctgttttattcatccttttttagtaattggcatctattgtgctagtatatttttactttttacacccttatcacagtaacattcctgcaaaactccgtacttatgtagggactatttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316086|gb|GR825895.1|GR825895
EST:     TCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTG                         GTAAATGAGGCTAAGAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATG
genomic: TCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaa ... ttttgacaagGTAAATGAGGCTAAGAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATG