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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaaatactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaag

Basic information

species Glycine max
transcript GLYMA20G24820.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 8
TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaaatactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaag
 || |||||||| |||||  |||| |||||||| || || |||||||||||    |||||    || || || |||||||||||||||||||||||| |||||||    | || |||   ||   | | | | | || ||| | |    |||| |  | |      |  || ||  |||| ||  |    ||| |   | |  ||   |  |    
AACTGCTGTGAGGGCATATTCAAAGCAGCTTTTCATCGCCCTGAAGCATCTGAAAAACTGCAAAGTGCTGCACTGTGATATAAAGCCAGATAATATGCTGgtatg----atat-ctggcttgcc-atact-tcttttctcacactagcatttgctcttgttttttggccat-tcggttttgtagaa----gttttgtcactatctacataaa----

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 8
TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaa--atactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaag
 || ||||| || ||||| || ||||||||||| |||||||| ||||||||  |||||||||| ||||| ||||||||||||||||||||||||||| ||||| |  | ||  ||||| || |||  || |||  |   || |   |||| ||||||       | || |||| | |   ||  |   |    |   |  ||| |||||||       
AACTGCTGTAAGGGCATATGCTAAACAGCTTTTCATTGCTCTCAAGCATCTTAGGAACTGTGGCGTTCTGCATTGTGATATAAAGCCAGATAATATGCTGgtaggttttaagtatacttttatgtccag-ttgcctgcctt-agttttttatttgtt-------ataataaat-tttgcattgaattttactatatattcattgcctctttcag----

upper sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S250_28V6.1 (Physcomitrella patens), 5'ss of exon 7
TACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaaatactgt-----tgtgt---------ttagattgtttcttttcaa---aattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttca----atttcctcttttgacaag---------------------------------------------------------
 || || ||  |||| || ||||||||| | ||||| ||||| || ||| | ||||||||||| ||| | || || || || ||||| |||||||||||||||||   ||  |  | |     | |||          |||| |||      |  |   | ||| ||       ||| |   |    | | || |   |  ||| || |     |    ||||   ||||| |||                                                           
GACTGCAGTCCGAGCTTATGCAAAACAGTTATTTATCGCTCTCAAACATTTGCGGAACTGTGGAGTTTTGCACTGCGACATCAAGCCTGATAATATGTTGgtatgttaaatgtgttttctacgtatgtgcaacagagctagagtgtagagcgtacagtgagtttagtggacctgttttattcatccttttttagtaattggcatctattgtgctagtatatttttactttttacacccttatcacagtaacattcctgcaaaactccgtacttatgtagggactatttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316086|gb|GR825895.1|GR825895
EST:     TCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTG                         GTAAATGAGGCTAAGAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATG
genomic: TCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaa ... ttttgacaagGTAAATGAGGCTAAGAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATG