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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgccacaattagcgtgtgtatgcaccaaaattctcgtgcatttattcctcagaatatggttgatgattcaaatcactcagtgtatgcaccaaaattctcattcttattcttattcaattggtttcag

Basic information

species Glycine max
transcript GLYMA20G23670.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23670.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 10
TGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgccacaattagcgtgtgtatgcaccaaaattctcgtgcatttattcctcagaatatggttgatgattcaaatcactcagtgtatgcaccaaaattctcattcttattcttattcaattggtttcag
||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||    || ||||||| ||| ||||| ||||||||||| ||||||||||   |    ||  || | |        | ||||| | | |  || |      || | ||   |||  | | || | | |   ||| |  ||  |  ||  | ||       || |              
TGGTGAAGATGCATATAAAAAAATACGAGCAGGAGCAACTCTTGTTCAGCTTTATACACAGTTTGCTTATGAGGGTCCTGCCCTTATTCCTCAAATAAAGgtatttactctgat--gctttt--------ctaaatttttggggtttca------aggaaatctatgagaacttaa-ttattatatgtgtatac--atgttgcctttgcggggtttgtg-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193378527|gb|FK344238.1|FK344238
EST:     TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
EST: gi|58022739|gb|CX709480.1|CX709480
EST:     TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
EST: gi|208178983|gb|GD980056.1|GD980056
EST:     TCTATACCGNATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAA
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAA
EST: gi|17022514|gb|BM093548.1|BM093548
EST:     TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAAGAGATG
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAAGAGATG
EST: gi|23729053|gb|BU762606.1|BU762606
EST:     TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
EST: gi|58019265|gb|CX706007.1|CX706007
EST:     TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
EST: gi|58016319|gb|CX703061.1|CX703061
EST:     TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG                         GCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT
genomic: TCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGgtatgcgcca ... ttggtttcagGCTGAATTAGCTTCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGAT