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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaataaatttaatagcatgtcacactttattgttaagctcatcatattaatgtatttcaaaatccttattgaacacactatactaacatatttgctgatttttcttctactag

Basic information

species Glycine max
transcript GLYMA20G22600.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaataaatttaatagcatgtcacactttattgtta--agctcatcata--ttaatgtatttcaaaatccttattgaacacactatactaacatatttgctgatttttcttctactag
||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || ||||||||||||||   | |||| ||  |||  |||| | | | ||| ||  |   | || ||||||  ||  | | | |  | |||||| |||                                          
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatat-atagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag--------------------------------------

upper sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaataaatttaatagcatgtcacactttattgttaagctcatcatattaatgtatttcaaaatccttattgaacacactatactaacatatttgctgatttttcttctactag
||  | || ||||| ||  |||| || || || |||||||| || || || || || ||||| ||||| ||||||||||| ||||| |||||||||||     | |  |||      | || || | || | |   |   ||| | || |   |   |  ||                                                      
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgta----agagcaatcatccggtatatctctctctctgtct---ctcttgatgtggctcgttgacag-----------------------------------------------------

upper sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaataaatttaatagcatgtcacactttattgttaagctcatcatattaatgtatttcaaaatccttattgaacacactatactaacatatttgctgatttttcttctactag
||  | || ||||| ||  | || || || || |||||||| || || || || || ||||| ||||| ||||||||||| ||||| |||||||||||     | |  |||      | || || | || | |   |   ||| | || |   |   |  ||                                                      
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgta----agagcaatcatccggtatatctctctctctgtct---ctcttgatgtggctcgttgacag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522569|gb|BU081380.1|BU081380
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|120495461|gb|EH223628.1|EH223628
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|12773850|gb|BG238777.1|BG238777
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCATAAGCGCATGCCTTCACAGGCTGTTGAT
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGAT
EST: gi|213604084|gb|DB974210.1|DB974210
EST:     CAGATTAAAGCACATCCATGGCACAA-                         TTTTGTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACT
genomic: CAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCT-TCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACT
EST: gi|208108061|gb|GD902041.1|GD902041
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|213601886|gb|DB976175.1|DB976175
EST:     AGATTAAAGCACATCCATGGCAC-AT                         TTAGATCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACT
genomic: AGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagAT-CTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACT
EST: gi|15287684|gb|BI471575.1|BI471575
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|207808577|gb|GD780564.1|GD780564
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGTTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|27426708|gb|CA938228.1|CA938228
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGGATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|11413300|gb|BF425311.1|BF425311
EST:     -TTATACAGAATTTAA-TTGCCACAGATTAAAGC-CATTCATGGCACAAG                         AACTTTCATAAGCGCATGCCT
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCT
EST: gi|209702061|gb|BW670545.1|BW670545
EST:     AGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: AGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|9258249|gb|BE346396.1|BE346396
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|209699788|gb|BW655801.1|BW655801
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|209721766|gb|BW666386.1|BW666386
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|15000029|gb|BI320843.1|BI320843
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACCAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|12774568|gb|BG239495.1|BG239495
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|254333710|gb|GR848628.1|GR848628
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|192321549|gb|FK012899.1|FK012899
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|6725763|gb|AW310162.1|AW310162
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|14990090|gb|BI315763.1|BI315763
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGGTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|11412139|gb|BF424159.1|BF424159
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|192321548|gb|FK012898.1|FK012898
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATTTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|120492579|gb|EH220746.1|EH220746
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|13481205|gb|BG510548.1|BG510548
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|254340934|gb|GR854662.1|GR854662
EST:     CACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: CACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|22525150|gb|BU083970.1|BU083970
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|13481244|gb|BG510587.1|BG510587
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaa ... cttctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA