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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTATAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcatatttcgcttaacatttgtttgattattattattattaggaggagtagttcagtgaaggattcctatattattatttaacatggctttgt...

Basic information

species Glycine max
transcript GLYMA20G20300.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g02040.1 (Oryza sativa), 5'ss of exon 6
TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTATAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcatatttcgcttaacatttgtttgattattattattattaggaggagtagttcagtgaaggattcctatattattatttaacatggctttgt-
||||||||  |||||||| ||||| || || ||||| ||||| ||| | |||||| | || |||||  ||||| | |||||||||||||| ||||| ||||| ||    ||   |  ||  | ||   |||  ||   || ||         |  || |  | | |     | | |||  ||| |||  |   |  |  | 
TGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGgtaagctatatcagtaactagaaatcatttttttttagataatggaagatgagtatattgaaattagtatgttcaataagatt-tttgcccctgtatgatc

upper sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 6
TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTATAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcatatttcgcttaac---atttgtttgattattattattattaggaggagtagttcagtgaaggattcctatattattatttaacatggctttgt
 ||||| ||||| | ||||||  | || |||||||| || || || || || ||  ||||| | ||||||||| |||||||||||||||| ||||||||||| ||| |||  | | | || ||   |||| ||  | |   || |||   |  | | ||  |  |          ||  | |  |||  |||| |   || | 
AGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTGGCCGTAAACCCGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGgtaagt-gcagctctagttttaccatatttcttgaacttccatgatt--caacaagtgtcttctaac--------cccctttggttacataacttttattag-

upper sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 6
TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTATAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcatatttcgcttaacatttgtttgattattattattattaggaggagtagttcagtgaaggattcctatattat--tatttaacatggctttgt-
 ||||| ||||| ||||||||||||||||| || || ||||||||||| || ||| |||| |||||||||||| | || ||||| ||||||||||||||||| ||    ||       | ||| || |    | |  | || ||  | | |  | |   | |    | | |   ||  ||||  |||| ||  | | |||   
CGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaaca--taaaccttggaagaacttatcttcttgctcgtatta-tctctgaacagaagttgaatagtttatcgtattgaaggttgttttaat