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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACTCTTGTTGCTTGATAAAGATATTCAAGATAGAGTTGAGAAGGCAGCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgtttccctccatttgcacatatatttttctatttgttcattttcaattcaatcttcgtataggatttggtgatgtttattgtttaaaattattcatatccaatattgtggttctttctatgctaattataacttttttttctcttcatag

Basic information

species Glycine max
transcript GLYMA20G11950.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G11950.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0009g01460.t01 (Vitis vinifera), 5'ss of exon 9
GTGGACTCTTGTTGCTTGATAAAGATATTCAAGATAGAGTTGAGAAGGCAGCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgtttccctccatttgcacatatatttttctatttgttcattttcaattcaatcttcgtataggatttggtgatgtttattgtttaaaattattcatatccaatattgtggttctttctatgctaattataacttttttttctcttcatag
|||| ||||||||||||||||| ||||| ||||| |||||| | ||||| || | | |||| || ||| | || ||||||||||| ||   ||| |||||| ||  | | |    | |||||     | |  ||     |||| |  |    ||     | | | | ||  |||   | ||   | || ||   ||| | | |                                                       
GTGGGCTCTTGTTGCTTGATAATGATATCCAAGAAAGAGTTCAAAAGGCTGCGTTAGATGGGAAGGTGCTTCGTTATGTCTGTGTTATTGAGGGCTCAAGgtattctaggtg---ttcattttttattgtcattgaaattttgatagtcagtaaaatgttttccttttataattcaatcat--ctgtttttctgaatgagtgagc-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305169|gb|FG997491.1|FG997491
EST:     GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAG                         GTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAACTCTCCCTTGGGAAGACT
genomic: GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgt ... ctcttcatagGTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
EST: gi|18040511|gb|BM308805.1|BM308805
EST:     GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAG                         GTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
genomic: GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgt ... ctcttcatagGTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
EST: gi|209725589|gb|BW677891.1|BW677891
EST:     GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAG                         GTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
genomic: GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgt ... ctcttcatagGTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
EST: gi|209698411|gb|BW667206.1|BW667206
EST:     GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAG                         GTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
genomic: GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgt ... ctcttcatagGTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
EST: gi|22930193|gb|BU547332.1|BU547332
EST:     GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAG                         GTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT
genomic: GCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGgcatcttcgt ... ctcttcatagGTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACT