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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCTCTTTATGATAGGCTCCTTGTTTCAGAGGATCTGTGGTCATTTGGGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctacttttaccatgtaacattttattttaggtcaaattacaatcgcattcataatttagttcaaattatgtttgatattcctatttttttcacc...

Basic information

species Glycine max
transcript GLYMA20G09810.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208156238|gb|GD953286.1|GD953286
EST:     AAGGAACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: AAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|17153948|gb|BM143881.1|BM143881
EST:     GTTGAGGACCATGTACGAAGAAACCAA-GACCTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: GTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|151398094|gb|EV267972.1|EV267972
EST:     GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|51344741|gb|CO985474.1|CO985474
EST:     GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|58014712|gb|CX701454.1|CX701454
EST:     GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|192315707|gb|FK011175.1|FK011175
EST:     GGAACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: GGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|22931876|gb|BU549015.1|BU549015
EST:     GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: gi|193708942|gb|FK645054.1|FK645054
EST:     AACTCCTCCTTCAG                         GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: AACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTGCTCTTTATGATAGGCTCCTTGTTTCAGAGGATCTGTGGTCATTTGGGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctacttttaccatgtaacattttattttaggtcaaattacaatcgcattcataatttagttcaaattatgtttgatattcctatttttttcacc

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC