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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttcttatcttagtttgccaagcacttcaacatgtgtccag

Basic information

species Glycine max
transcript GLYMA19G42790.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g30970.1 (Oryza sativa), 5'ss of exon 10
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttcttatcttagtttgccaagc----acttcaacatgtgtccag
 ||||||||||| | |     ||||| |  |||   | |||  | |||||||| || ||||||||||| || || || ||||| |||||||||||||| ||| ||   ||  ||||  ||       |  |  | | | ||| || ||| |   ||| | ||      ||       ||| | |||
TTGTTTGTGGATAAGTTCCAGGAAAAAGTTCAACATACTTTCTTGGACTACATTTCCAGTGGTTTTGAGCTAAATTTTATGGTGGCTGTAGATTTCACGGgttagcgccatgtttcagcttaaatatatagc-actgtcaatctcatatat--atttacaaaagtgcaaccctggtgtgttttcag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 10
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttcttatcttagtttgccaagcacttcaacatgtgtc-cag
||  |||||||||  |||   || || |  || | ||||||| |||| |||||||| ||||| |||||||| || ||||||||||| || || ||||||||| | | ||  | |||| || |     |       | |  | ||   | | | | |    |||          ||| |  |||
CTCATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGCTTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGgtgattcaccttcttctact-tcatatatatcttatctttacttagaaaccttgatcattaagattgatggtctgtctttcag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 7
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccag
|| ||||| ||||||| ||| || ||| | | || |||||||||||| ||  | |||||||| |||||| | || || ||||||||||| ||||| |||||||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | |||||||
CTATTTGTTGATCAATTTTGTGAGAAGCAGCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAATTTAATTTTATGGTTGCTGTTGATTTTACTGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccattttattttgtccag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 8
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca-cttcaacatgt-gtccag
|| ||||| ||||||| ||| || |||   | || |||||||||||| ||  | |||||||| |||||||| || || ||||||||||| ||||| || ||||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||| ||     || | ||||||
CTATTTGTTGATCAATTTTGTGAGAAGCCTCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAACTTAATTTTATGGTTGCTGTCGATTTTACCGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 11
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccag
|| ||||| ||||||| ||| || ||| | | || |||||||||||| ||  | |||||||| |||||| | || || ||||||||||| ||||| |||||||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | |||||||
CTATTTGTTGATCAATTTTGTGAGAAGCAGCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAATTTAATTTTATGGTTGCTGTTGATTTTACTGgtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 10
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca-cttcaacatgt-gtccag
|| ||||| ||||| | ||| || ||| | | |  |||||||||||| ||  | |||||||| |||||||| || || ||||||||||| ||||| || ||||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||| ||     || | ||||||
CTATTTGTTGATCAGTTTTGTGAGAAGCAGCTACACAGTTTTATTGATTATGTTTCTAGTGGATTTGAACTTAATTTTATGGTTGCTGTCGATTTTACCGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 10
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccag
|| ||||| ||||||| ||| || ||| | | || |||||||||||| ||  | |||||||| |||||| | || || ||||||||||| ||||| |||||||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | |||||||
CTATTTGTTGATCAATTTTGTGAGAAGCAGCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAATTTAATTTTATGGTTGCTGTTGATTTTACTGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccag