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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGACTATGCCGCCAGGGGATGCTTCTCAATCAGGGTTCAACTTTGGTGGCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgctttactaagataacatgttttatttggctttgttacattttctctgcaatttttttatttgaaatagcaatgtttggcagtttgtattctgtgctttcctttatcgtgtggacattattttgaattttgttaactgcag

Basic information

species Glycine max
transcript GLYMA19G41770.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329435|gb|FK022183.1|FK022183
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAA-GTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|207795814|gb|GD764081.1|GD764081
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAA
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACA-
EST: gi|192314476|gb|FK008418.1|FK008418
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|21677579|gb|BQ629930.1|BQ629930
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|208297654|gb|GE090601.1|GE090601
EST:     GCGCTCAACCTCCTGCTGTGCCTCCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|207815069|gb|GD787785.1|GD787785
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|208277632|gb|GE078251.1|GE078251
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|10253837|gb|BE821603.1|BE821603
EST:     GATTCAACTTCAATTAGAAG                         GAGCTTTGGNNGGTCTATCAGTAAAGTGACTAAAGTNNTCCAGTTNNNNAG
genomic: GATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|192314475|gb|FK008417.1|FK008417
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|192329436|gb|FK022184.1|FK022184
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACT-AAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGACTATGCCGCCAGGGGATGCTTCTCAATCAGGGTTCAACTTTGGTGGCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgctttactaagataacatgttttatttggctttgttacattttctctgcaatttttttatttgaaatagcaatgtttggcagtttgtattctgtgctttcctttatcgtgtggacattattttgaattttgttaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA