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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctag

Basic information

species Glycine max
transcript GLYMA19G41420.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctag
||| |||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||||| || |||||||| || |||||||||||||||  | |||| ||   | |||       | |  | |  |    ||| | ||    ||||  | || |||  |   ||   | |||                                            
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaa---agtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcat--atccttgttgccag----------------------------------------

upper sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctag
||  |||| || || ||| | || |||||||||||||||||||| ||||| || || || || || || || ||||| || ||||| ||||||||||||   |   |   | |  ||    |  | || |  | || |    |   || ||    ||  | |  ||     |   |  | |||    | ||  | |  | | | |                     
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgtgtgttagtggtctg-gtatggtgctttggagat-gtactg----taacagttgattggaaagcgttacctgt---attcataataacggtgatt---------------------

upper sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaattta-ataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctag
||  | || ||||| ||  |||| || || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||||||||||||  |  ||| |      ||| |  |   | | |    ||  ||    |    ||| |                                                                        
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag-----------------------------------------------------------------------

upper sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaattta-ataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctag
||  | || ||||| ||  | || || || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||||||||||||  |  ||| |      ||| |  |   | | |    ||  ||    |    ||| |                                                                        
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag-----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407080|gb|FK375255.1|FK375255
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|26047711|gb|CA784420.1|CA784420
EST:     ACTATACAGAATTTAAATTCCCACATATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|193616610|gb|FK568242.1|FK568242
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|6963904|gb|AW432597.1|AW432597
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTGTCACAAGCGCATGCCTCCAGAAGCTGTTGATGTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA