1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttcttgaattattcttcaacttgaatgcctgttacttaagatatggcttagctgatggactaatttaatcttaacttgaatgcctgttacctaagatatgtcttagctaatagactaatttaatctttaattgcag
species | Glycine max |
transcript | GLYMA19G41120.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|9258700|gb|BE346847.1|BE346847
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCTAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAAEST: gi|7692402|gb|AW760509.1|AW760509
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAA
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|21675978|gb|BQ628329.1|BQ628329
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|7925196|gb|AW831222.1|AW831222
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCEST: gi|192322841|gb|FK014772.1|FK014772
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTC
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|254320265|gb|GR831073.1|GR831073
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|192312976|gb|FK003642.1|FK003642
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|6914718|gb|AW396248.1|AW396248
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAGGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|10252856|gb|BE820622.1|BE820622
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|192312975|gb|FK003641.1|FK003641
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|16282781|gb|BI945202.1|BI945202
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|254320264|gb|GR831072.1|GR831072
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|31476328|gb|CD418356.1|CD418356
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|209724788|gb|BW672571.1|BW672571
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|19346981|gb|BM891861.1|BM891861
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|14259461|gb|BG882369.1|BG882369
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGEST: gi|208044091|gb|GD842853.1|GD842853
genomic: CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
EST: TGGCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT GATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
genomic: TGGCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttct ... ttaattgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATgtatgtttcttgaattattcttcaacttgaatgcctgttacttaagatatggcttagctgatggactaatttaatcttaacttgaatgcctgttacctaagatatgtcttagctaatagactaatttaatctttaattgcag
- - - - - - AGTGGA
- - - - - - - - - - - - - - - GGAGAT