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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaactttgccagtgttttatcaattctcatatttgtcattttgcttccacactgttagtttttcagtgaacaccaaataaatctctttgaattttgcatag

Basic information

species Glycine max
transcript GLYMA19G40930.4
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 5'ss of exon 9
TAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgt-catcaactttgccagt-gttttatcaattctcatatttgtcattttgcttccacactgttagtttttcagtgaacaccaaataaatctctttgaattttgcatag
  | || || |||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||| || || ||||| ||| | ||||| || ||||| ||         ||| |   ||||| || |    |  |           |     ||| | |   ||  ||   || |   |||||    ||  |||  |  |   
CCGCGAAAACTATTCTCCAGGATGGAAGTATTCCCACTGGGAGATGAAAGGCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacagaggtcacaccatttaatttattaacttcattgatcagtggcacattaat-tactataatgcttctag--gactcttcataaagtagtt--aatgataaa---

upper sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G094123_T01 (Zea mays), 5'ss of exon 9
TAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaactttgccagtgttttatcaattctcatatttgtcattttgcttccacactgttagtttttcagtgaacaccaaataaatctctttgaattttgcatag-
  | || ||||| ||||| || |||||||||||| |||||||||||||||| |||||  | |||||||| ||||| ||||| ||| | ||||| || |||||     | | |     |     ||||    |||| |||   | || | |  |||| | ||   || | |      | |   || ||   ||    |    |||   
CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagtattttcctcgcaaatcaccattcatgttta--aattggat--cacattttt---ttgttaactcttatcttttatattaattaatgtgccacatgaa

upper sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 10
lower sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 9
TAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaactttgccagtgttttatcaattctcat-atttgtcattttgcttccacactgttagtttttcagtg-aacaccaaataaatctctttgaattttgcatag-------
 || || || || ||||||||||||||||||||  ||||||||||||| || |||||  | || ||||| ||||| || |  ||  ||| |||| | |||||||     |||   | | | | ||||||||     |  | | || |||     |      | ||||     || |||    |||  | ||    | ||||    ||        
AAGGGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAATGATCAGgtcagtccgttt---aatatctcatcaattccttcgacatataatattgaagtaa-gtgcctggtttaaatatgtaacttgtaatgtagctaaacggatttcatttatcccatag

upper sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
TAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtc--atcaactttgccagtgtttt-atcaattctcatatttgtcattttgcttccacactgtta-gttt-ttcagtga---acaccaaataaatctctttgaattttgcatag------------------------------------
||||||||| ||||| || || |||||||||||  | ||||||||||| || |||||||| |||||||| ||||||||||| || ||||| || ||||||||      ||         | |||| ||    | |||      |  |||    |  | | | ||  || | ||||||     |    |  |  || || |||  |||| | ||                                     
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttttatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgc-ttttacttatttactggaagaatgatatattttgttctatccacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700236|gb|BW664461.1|BW664461
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|193720621|gb|FK661991.1|FK661991
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|193687052|gb|FK630797.1|FK630797
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|58024431|gb|CX711172.1|CX711172
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|22932318|gb|BU549457.1|BU549457
EST:     GGGTTCCTNNAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|58014455|gb|CX701197.1|CX701197
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|48574957|gb|CO036162.1|CO036162
EST:     CCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: CCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT