Sequence
atgc intronic sequence ATGC exonic sequenceCTGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtgggatggttttgcttaagctggcttgtgccaacttccaagtttattaactgcatctatatcattttggtactatggccgcaagaaatatcttct...
Basic information
species | Glycine max |
transcript | GLYMA19G38780.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G52390.1 (Arabidopsis thaliana), 5'ss of exon 10
CTGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtgggatggttttgcttaagctggcttgtgccaacttccaagtttattaactgcatctatatcattttggtactatggccgcaagaaatatcttct----
| ||||| ||||| || || || |||||||| ||||| |||||||||||||||||||||| | |||| |||||||| ||||| ||||||||||| | || |||| | | | |||| | ||||| ||| | || | |||| || | || | | |||| | | ||||||
CCGGAATCAAGTTTGTAAAGTCGACTTGGCCTTCCAAGAAAAAAGAGAAGTATGATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGTCAGgtgagtgtagct-tctagattaaaat--cttgt---------caaatccataa---gcatatacagtcttcgaacaattcttaggcaatcattttcttctccag
upper sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 10
CTGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtgggatggttttgcttaagctggcttgtgccaac--ttccaagtttattaactgcatctatatcattttggtactatggccgcaagaaatatcttct
|||| ||| |||||| |||||| ||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||| || ||||| ||| || ||||| | | | | | | || ||| || | ||| | | | || || || | | || ||
CTGGGATTAATTTTGTGAAATCTTTGTGGCCCTCTAAGAAGAAGGAGAAGTATGAACAGGAGTGCATTGTTAAGGGCCGCAATGAGCCGTGTTTGGTTCGgtgagtggaaatttctcatgatgcttcatataaactaatggttctaatataatttcttagaaagaaatgcttcatataaactcatttttggttattattt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192332144|gb|FK026382.1|FK026382EST: TATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAA GCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAA
genomic: TATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtggga ... aattttccagGCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtgggatggttttgcttaagctggcttgtgccaacttccaagtttattaactgcatctatatcattttggtactatggccgcaagaaatatcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggatgg