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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACAAGGAAGGCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattttcccctcatcaaaaatttgtttatggtgctttggcatttcaggtgtcttcatttacaggactttgacaattgctattatgttcttag

Basic information

species Glycine max
transcript GLYMA19G37520.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591405|gb|AW707139.1|AW707139
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACANGGGAGACAAN
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|209703741|gb|BW656874.1|BW656874
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAG
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAG
EST: gi|254344482|gb|GR851179.1|GR851179
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|254320729|gb|GR827178.1|GR827178
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|7589135|gb|AW704915.1|AW704915
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|16346691|gb|BI972286.1|BI972286
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|207780537|gb|GD750834.1|GD750834
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|23063689|gb|BU578600.1|BU578600
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|208083109|gb|GD882235.1|GD882235
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|4297320|gb|AI442601.1|AI442601
EST:     TGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: TGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|151406763|gb|EV276578.1|EV276578
EST:     CTTGGAATTGCTGAAAACTGCCATCGCCAAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: CTTGGAATTGCTGAAAACTGCCATCGCC-AAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|58021795|gb|CX708536.1|CX708536
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|7028185|gb|AW457968.1|AW457968
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|5057948|gb|AI736424.1|AI736424
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
EST: gi|209725450|gb|BW658303.1|BW658303
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGC
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGC
EST: gi|24137025|gb|BU927535.1|BU927535
EST:     GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAA                         GTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA
genomic: GCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattt ... atgttcttagGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAACAAGGAAGGCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAgttagtattttcccctcatcaaaaatttgtttatggtgctttggcatttcaggtgtcttcatttacaggactttgacaattgctattatgttcttag

- - - - - - - - - - - - - - - - - - - - -  AAGCTG