1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtattgttaaattgtatttgtccattgattaattatttttgttattatgtgacaatttccgtattcatttataatttcttctttag
species | Glycine max |
transcript | GLYMA19G29990.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAAATTAAT GATGTNTTTG-GATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAEST: gi|22523888|gb|BU082699.1|BU082699
genomic: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtatt ... tcttctttagGATGT-TTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGA
EST: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAAT GATGTTTTGAGATCCACAAEST: gi|27423797|gb|CA935317.1|CA935317
genomic: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtatt ... tcttctttagGATGTTTTGAGATCCACAA
EST: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAAT GATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAAEST: gi|58017180|gb|CX703922.1|CX703922
genomic: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtatt ... tcttctttagGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAA
EST: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAAT GATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAA
genomic: TGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtatt ... tcttctttagGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtattgttaaattgtatttgtccattgattaattatttttgttattatgtgacaatttccgtattcatttataatttcttctttag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG