Sequence
atgc intronic sequence ATGC exonic sequenceCCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGgttagttttttaacctcaatttagtgtttccattttagcgatattgtttttcttcatcctgaacaaatgcatataatgttcttcacag
Basic information
species | Glycine max |
transcript | GLYMA19G27800.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 5'ss of exon 10
CCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGgttagttttttaacctcaatttagtgtttccattttagcgatattgtttttcttcatcctgaacaaatgcatataatgttcttcacag
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CCAGAGAAGAAGAACCCTACTTTAACACCAATGGATTGGGTCAAGTTTCTTATTTCTGCTGTTATTGGTCTGgtatgtttctgatcttttggcta-tccctgcatgcaactctagcaatattttactatatcgatcccttacccttg--gtcccttgcag
upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 10
CCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGgttagttttttaacctcaatttagtgtttccattttagcgatattgtttttcttcatcctgaacaaatg-catataatgttcttcacag
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CCTGAGAAAAGAAACCCTGGACTGACTCCAATGGATTGGGTCAAATTTCTAATATCTGCAGTAGTTGGTCTGgttggtcttcttggcagattct----tttcttttgttgcagt-tcatgtttacatgtctttcttggttatcatatgactttttgtacag
upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 10
CCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGgttagttttttaacctcaatttagtgtttccattttagc--gatattgtttttc-ttcatcctgaacaaatgcatataatgttcttcacag
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CCAGAAAAGAAAAATCCAGGTTTAACTCCGATGGACTGGGTCAAGTTCATTGCGTCTGCTGTAGTTGGGCTGgtcagatatttgatatccat--aatatttaatatgtagatggtttttgtctttcatccatcttgttcacttacatgt--ctttctttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13481712|gb|BG511055.1|BG511055EST: TAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTG GTTGCTGTTGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
genomic: TAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGgttagttttt ... ttcttcacagGTTGCTGTTGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGgttagttttttaacctcaatttagtgtttccattttagcgatattgtttttcttcatcctgaacaaatgcatataatgttcttcacag
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