1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCAAGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttgcttgaattagaagttgattcaatgtaatgtatgacttgtcaacttttcattgatagtttatgcatttctgtag
species | Glycine max |
transcript | GLYMA19G22520.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTTEST: gi|7639784|gb|AW734099.1|AW734099
genomic: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
EST: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTTEST: gi|208117534|gb|GD917776.1|GD917776
genomic: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
EST: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTTEST: gi|10844807|gb|BF068009.1|BF068009
genomic: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
EST: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTTEST: gi|197661912|gb|FD480321.1|FD480321
genomic: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
EST: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTTEST: gi|193555428|gb|FK514305.1|FK514305
genomic: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
EST: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTTEST: gi|16105754|gb|BI893494.1|BI893494
genomic: AGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
EST: GCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATG CTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
genomic: GCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttg ... atttctgtagCTGACAGATGATAATCTGAATCCAAAGAAGCGAGTTGCTACCCAATATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCAAGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTATGgtactgtttgcttgaattagaagttgattcaatgtaatgtatgacttgtcaacttttcattgatagtttatgcatttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG