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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttatttaatcatgcttataatgggttattcatgcatgaatgtctgtggggagcattatttctcctttgcttttaatttacatgaatgtgttttt...

Basic information

species Glycine max
transcript GLYMA19G18330.3
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208070840|gb|GD869277.1|GD869277
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATGTGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|207779304|gb|GD751562.1|GD751562
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|208215163|gb|GE011030.1|GE011030
EST:     GTGTTATATGTTCTTCTTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: GTGTTATATGTTC-TC-TTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|298165858|gb|HO008829.1|HO008829
EST:     AGTGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: AGTGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|192323902|gb|FK018638.1|FK018638
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         ATAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|192330068|gb|FK020884.1|FK020884
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|208339393|gb|GE134437.1|GE134437
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|193394029|gb|FK358118.1|FK358118
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|58016595|gb|CX703337.1|CX703337
EST:     TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|7685042|gb|AW755690.1|AW755690
EST:     TTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: TTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
EST: gi|208221311|gb|GE016389.1|GE016389
EST:     TAGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAG                         GTAAAAATTAGTGGATGTGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA
genomic: T-GTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttat ... ttgtgtgcagGTAAAAATTAGTGGATATGCAGCATCAGGAGGTGGCAGAGGCATTGAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGTTATATGTTCTCTTGAAGACGTGAGCACAATAAAGCCTGGGAAGgttagtttatttaatcatgcttataatgggttattcatgcatgaatgtctgtggggagcattatttctcctttgcttttaatttacatgaatgtgttttt

- - - - - - - - TTGAAG
- - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggga