Sequence
atgc intronic sequence ATGC exonic sequenceCCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGgtactcatttttattccatgttttaagttgtcatgttgatgatttgacactactcggggaatggtcctctacttgaatgtgaccctgtagtgaaagcatcttttgctggtccttttgttaatttttagatttggcttggtggtggttgttgtatgtttaatttaattttcaacatattgtgcaacag
Basic information
species | Glycine max |
transcript | GLYMA18G49660.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G49660.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g25940.2 (Oryza sativa), 5'ss of exon 10
CCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGgtactcatttttattccatgttttaagttgtcatgttgatgatttgacactactcggggaatggtcctctacttgaatgtgaccctgtagtgaaagcatcttttgctggtccttttgttaatttttagatttggcttggtggtggttgttgtatgtttaatttaattttcaacatattgtgcaacag
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CTACTAGGAGATTTATTGATTCTGTTAAGATACCCTATCATGCCCCATCATTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactgtt----catattttg---tcacattcagataatcaatcaatcaaaaagaacatgttgctgagtt--atgaatcattacag-------------------------------------------------------------------------------------------------
upper sequence: GLYMA18G49660.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 10
CCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGgtactcatttttattccatgttttaagttgtcatgttgatgatttgacactactcggggaatggtcctctacttgaatgtgaccctgtagtgaaagcatcttttgctggtccttttgttaatttttagatttggcttggtggtggttgttgtatgtttaatttaattttcaacatattgtgcaacag
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CCACCATCAAGTTTGTTGATGCATTGAAAATCCCTTATATTGCCCCATCCTTCGGAGGCTGTGAGAGCATTGTTGATCAGCCTGCGATTATGTCTTACTGgtattccccttcattcc---tctcatgtagtagcataaatgaat--acccctgtttggcattggtctcac---tgaata---------atcacaagacttgcacattgggtttcaccttgtccttg-----ttacttggttctgattctt------ttaattgaattgttcgtgctttccaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9900068|gb|BE609036.1|BE609036EST: TTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTG GGATCTTCCTCAGTCAGAAAGGGCCAAGTATAAGATTTATGACAACCTGGT
genomic: TTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGgtactcattt ... tgtgcaacagGGATCTTCCTCAGTCAGAAAGGGCCAAGTATAAGATTTATGACAACCTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGgtactcatttttattccatgttttaagttgtcatgttgatgatttgacactactcggggaatggtcctctacttgaatgtgaccctgtagtgaaagcatcttttgctggtccttttgttaatttttagatttggcttggtggtggttgttgtatgtttaatttaattttcaacatattgtgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA