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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGGcaagtgactagcttatgtccataaaaatagttatgaatttagaatgttacattttgttctctgttacagc

Basic information

species Glycine max
transcript GLYMA18G46610.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21887321|gb|BQ740534.1|BQ740534
EST:     GTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGC                         TTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACTGACCCTCGTCTCC
genomic: GTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGGcaagtgacta ... ctgttacagcTTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACTGACCCTCGTCTCC
EST: gi|6483253|gb|AW202421.1|AW202421
EST:     GTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGC                         TTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACTGACCCTCGTCTCC
genomic: GTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGGcaagtgacta ... ctgttacagcTTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACTGACCCTCGTCTCC
EST: gi|254319563|gb|GR829075.1|GR829075
EST:     CCTGCTCCAGATAC-G                         CTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACCTGA-CCTCGTCTC
genomic: CCTGCTCCAGATACGGcaagtgacta ... ctgttacagcTTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTA-CTGACCCTCGTCTC
EST: gi|7796354|gb|AW781751.1|AW781751
EST:     GTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGC                         TTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACTGACCCTCGTCTCC
genomic: GTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGGcaagtgacta ... ctgttacagcTTTTATCGTTGGAAGAGCTTCGGGAACAACGTCTTACTGACCCTCGTCTCC