Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttttttactcctcatttgctcctggagtatgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg

Basic information

species Glycine max
transcript GLYMA18G45960.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcat-ttttttactcctca----tttgctcctggagt-atgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg
 | ||||| ||||| || ||||||||||| | ||||||||||||||| ||  | ||||| || || |||||||||||||| || |||||||| |||||| |    | | | | |||  |    |||  | ||  | | ||| ||  |    |    ||||  |||||     ||                        
ATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGgttggtggatctctaattccatagcactttagttctacactgatgtaaccttc--tcacaaaatttttccaactgcag------------------------

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G131853_T01 (Zea mays), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttttttactcctcatttgctcctggagtatgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg
 | ||||| || || || ||||| || || | ||||||||||||||||||  ||||||| ||||| |||||||||||||| || |||||||| ||||||||   | | | |   |  |  || |  |    | ||  |  ||||     |  | ||   |||       |  | |||||| |   | |    
ATTTTGGGTACTCCAACAAGAGAGGAGATCAGGTGCATGAATCCAAATTATTCCGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAGgttagggatctctaatctccaaggtgtttttttcatttg--agctgtagccagttgaaac---cagctcaccctaagttcgatt-tccgtgtag--

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G109624_T01 (Zea mays), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttttttactcctcatttgctcctggagtatgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg
 | ||||| || || || ||||| ||||| | ||||||||||||||||||  | ||||| ||||| |||||||||||||| || |||||||| ||||||||   | | | |   ||    || |  |     ||   |  ||||||   |  | |    ||   |    | ||||   |  | ||       
ATTTTGGGTACTCCAACAAGAGAGGAAATCAGGTGCATGAATCCAAATTATTCTGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAGgttagggatctctaatctctgtggtgttttttt--catttcagctgtaatgagttgacaagctcacctaag--tttgattc-tcgtgtag------

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttttttactcctcatttgctcctggagtatgcaatt-tgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg
 |  | || || || || ||||||||||||  ||| |||||||| |||||||| || || ||||||||||| || ||||| ||||| ||||| ||||||    ||   | |   |   |       ||| |  ||   || |  || ||| |  || |      || | | ||  ||                
ATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGgtt--tgttaaataatcgcaggtgcctctttggtgcgtgtgcttgttcaaatgaaatttaatgt--agcatataactcttcag--------------

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGtt----agcatttttt-----tactcctcatttgct-cctggagtatgcaatttgtaattgataa-atacttccagtcagagatctgatcgattatttatatcagg
 |  |||| ||||| |||||||||||||| ||||||||||||||||||||||  || || |||||||| || || ||||| ||||||||||| ||||||    | || || |      ||   |  || |||| || |   |     || | | ||  || | ||   |  || || |    |  |  | | ||  | ||  |
ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAGgtttgtcaacaattctaaagggtagatcatatctgctgcccgacatcactgatatttgataaattatatttctatagccaaaagcttatttaagttttgttttccag

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 5'ss of exon 9
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGt---tagcatttttttactcctcatttgctcctggagtatgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg---------
 | ||||||||||||||  | || || ||||||||||||||||| || ||||| || || |||||||| || || || || ||||| ||||| || ||   | |  ||| |  |  |    ||| |  || | |  |      |||| |  | || |          |||  |  || ||  | ||  | | ||          
GTGTTGGGAACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCGTGGCACAAAgtatgtggtctttgtgaatgcactgtttccatcttgggctttggtagtgtagtccagaagtgg--------agatgtacgaccgtgttttcgtgtgagcggtgggttt

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGt-tagcatttttttactcctcatttgctcctggagtatgcaatttgtaatt-gata--aatacttccagtcagagatctgatcgattatttatatcagg---------------------------------------------------------------------------------------------
 | || || ||||| ||  | || || ||||||||||||||||| || ||||| || || ||||||||||| || || || ||||| ||||| ||||| | |  | | | |     | |  |  |  | | |  |  | | | ||||| ||||  |||  | |  |||   ||| |    ||||  ||  ||  ||                                                                                             
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtg-gtctattatataatttgataggaattatccgtgtcctcgatattggtgatt--ttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttttttactcctcatttgctcctggagtatgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg
 |||| || || || ||  | || ||||| || |||||||||||||| ||||| || |||||||| |||||||| ||||| || || ||||| ||||| ||     |  | |     || |    ||        |    |||   |  |  | |                                     
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag------------------------------------

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttttttactcctcatttgctcctggagtatgcaatttgtaattgataaatacttccagtcagagatctgatcgattatttatatcagg
 |||| || || || ||  | || ||||| || |||||||||||||| ||||| || |||||||| |||||||| ||||| || || ||||| ||||| ||     |  | |     || |    ||        |    |||   |  |  | |                                     
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933666|gb|BU550805.1|BU550805
EST:     TTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGG                         TTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGC
genomic: TTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttt ... ttatatcaggTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGC
EST: gi|151396011|gb|EV265888.1|EV265888
EST:     TTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGG                         TTTTTCACAAGAAGATGTCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGC
genomic: TTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttt ... ttatatcaggTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGC
EST: gi|10843847|gb|BF067095.1|BF067095
EST:     TTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGG                         TTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGC
genomic: TTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGttagcatttt ... ttatatcaggTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGC