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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTAATGGTGCTTTATCACTCGAACTCTCAAATGAACATCCAAATTTGCGTATCATTCATCGTAAAGTTGCTGTAATTTTGGGGCAgtgggtttctgaggtatataatttattgagttgctttatgaataaacttcaaaatttcacaattcaatttattgagttgctttatgagaaagattctatatctcactacaatcagtggtcatctaatcttagagaggcttttgtatttagacaaggaaagcagtcatagtgtattgatag

Basic information

species Glycine max
transcript GLYMA18G43420.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTTAATGGTGCTTTATCACTCGAACTCTCAAATGAACATCCAAATTTGCGTATCATTCATCGTAAAGTTGCTGTAATTTTGGGGCAgtgggtttctgaggtatataatttattgagttgctttatgaataaacttcaaaattt-cacaattcaatttattgagttgctttatgagaaag---attctatatctcactacaatcagtggtcatctaatcttagagaggcttttgtatttagacaaggaaagcagtcatagtgtattgatag
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GTTTAATGGTGCTCTATCCCTTGAACTCTCAAATGACCATCCAAATAGGCGTATCATCCACCGAAAAGTTGCTATGATATTGGGACATTGGGTTTCGGAGgtac---tgctgtttacttgttttacaccggctttaccatgtttatgcagctaagcttgacaag--gctttggaggaaatcacatcttatctttttttctaaaag------------------------------------------------------------------