Sequence
atgc intronic sequence ATGC exonic sequenceTGTAGTTACTACCACCACTCACAAGTCACTTCGGGGACCACGTGGAGCTATGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagtatcctggagaaaataatttgacatttttgtttattttgatctctgtactctcggatttcattctgatcaataggatagtttgtgttgtttcctacttgagttgatgtaaattcataaatcataacagttgttcttcttgcaatttgaag
Basic information
species | Glycine max |
transcript | GLYMA18G27710.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 9
TGTAGTTACTACCACCACTCACAAGTCACTTCGGGGACCACGTGGAGCTATGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagtatcctggagaaaataatttgacatttttgtttattttgatctctgtactctcggatttcattctgatcaataggatagtttgtgttgtttcctacttgagttgatgtaaattcataaatcataacagttgttcttcttgcaatttgaag
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TGTAGTGACTACCACTACTCACAAGTCACTCCGTGGACCACGTGGAGCCATGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatata-cttgagcagaacaat--agcaagatagtagcgtagggtgttggtact-----gtttcttctccatcc-tgtgactctgtgagct---------tcaaaaaaataaaaatgcctaa----tgaccctctaccgtctag----------
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G135283_T02 (Zea mays), 5'ss of exon 8
TGTAGTTACTACCACCACTCACAAGTCACTTCGGGGACCACGTGGAGCTATGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagtatcctggagaaaataatttgacatttttgtttattttgatctctgtactctcggatttcattctgatcaataggatagtttgtgttgtttcctacttgagttgatgtaaattcataaatcataacagttgttcttcttgcaatttgaag
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TGTAGTGACTACCACTACTCACAAATCACTCCGTGGGCCACGTGGAGCCATGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgta--tggcatgatgaaaacgataaaaaaaactagcaggtgttgaac-ctgc-ttcttgcattaaaaaccaaaggtttag-tgatatacttaatattctatag----------------------------------------------------
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 9
TGTAGTTACTACCACCACTCACAAGTCACTTCGGGGACCACGTGGAGCTATGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagt-atcctggagaaaataatttgacatttt-----tgtttattttgatctctgtactctcggatttcatt-ctgatcaataggatagtttgtgttgtttccta-cttgagttgatgtaaattcataaatca-taacagttgttcttcttgcaatttgaag
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TATAGTGACAACCACAACCCACAAGTCACTCCGTGGACCACGTGGAGCCATGATTTTCTTCAGGAAGGGGGTAAAAGAGGTTAATAAACAAGGGAAAGAGgtgagttgttttaaggaaaatatcattttattttaaccatttctcccttgacctagatatcct---actccattactgttttaagtgtctgcttcttttgttactgaacttgaggttatattgttggacgtggaactaacatttatactttatata-tgtgaag
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 2
TGTAGTTACTACCACCACTCACAAGTCACTTCGGGGACCACGTGGAGCTATGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagt-atcctggagaaaataatttgacatttttgtttattttgatct--ctgtactctcggatttcattctgatcaataggata---gtttgtgttgtttcctacttgagttgatgtaaattcataaatcat------aacagttgttcttcttgcaatttgaag
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TATAGTGACAACCACAACCCACAAGTCACTCCGTGGACCACGTGGAGCCATGATTTTCTTCAGGAAGGGGGTAAAAGAGGTTAATAAACAAGGGAAAGAGgtgagttgttttaaggaaaatatcattttattttaaccatttctcccttgacctagatatcatactccattactatttattaggcaagtgtctgcttcttttgttactgaacttgaggttatattgttggacgtggaactaacatttatactttatata-tgtgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120533930|gb|EH262063.1|EH262063EST: TGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAG CTATTGTATGACTATGAGGACAAAATCAACCAAGCTGTTTTCCCTGGACTG
genomic: TGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagtatcc ... caatttgaagCTATTGTATGACTATGAGGACAAAATCAACCAAGCTGTTTTCCCTGGACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAGTTACTACCACCACTCACAAGTCACTTCGGGGACCACGTGGAGCTATGATATTCTACAGAAAAGGCGTTAAAGAAATTAACAAACAAGGAAAAGAGgtaagtatcctggagaaaataatttgacatttttgtttattttgatctctgtactctcggatttcattctgatcaataggatagtttgtgttgtttcctacttgagttgatgtaaattcataaatcataacagttgttcttcttgcaatttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA