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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGgtttgaattctatatcttttcacgtctgaggtcttctgttactactacatttattgatagtttctggtaatttgcaagtattaaacttgtcctgatctggagaagtatgatgttaagaagtctatcatggaaatttctgtag

Basic information

species Glycine max
transcript GLYMA18G12730.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G12730.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 11
AATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGgtttgaattctatatcttttcacgtctgaggtcttctgttactactacatttattgatagtttctggtaatttgcaagtattaaacttgtcctgatctggagaagtatgatgttaagaagtctatcatggaaatttctgtag
||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |||| ||  |||||      |||| |  |||| | | | | |   |||   | || |  |  || |   | ||  | | | |||     | || |  |  ||   || ||   ||||||||  ||                            
AATAAATGTAATGTGGGTTATGCCTTTATCAACATGGTGTCTCCTTCGCACATTATCCCCTTTTATGAGgtt------ctattttctttcccctgttatgaagtct--cattagtcaaactactatcaattcgttggattttc----ttttcacatcatc--aatatgctaaagtatgaactt----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172986|gb|HO019985.1|HO019985
EST:     ATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAG                         GCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCA
genomic: ATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGgtttgaattc ... atttctgtagGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCA
EST: gi|51336464|gb|CO980330.1|CO980330
EST:     ATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAG                         GCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCA
genomic: ATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGgtttgaattc ... atttctgtagGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCA
EST: gi|12690900|gb|BG157236.1|BG157236
EST:     ATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAG                         GCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCA
genomic: ATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGgtttgaattc ... atttctgtagGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCA