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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGAGACAGTTGCTGCAGCAACTTCTATACTGTCCTATGTAGAACCCTCATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACGgttagtactgctgcatgaattttatgttacaagttcaatagttatatgtggttaatggcatatccaaagcatactttttttcttgatagaatgcctcctg...

Basic information

species Glycine max
transcript GLYMA18G07950.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07950.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0015g01270.t01 (Vitis vinifera), 5'ss of exon 10
CTCCGAGACAGTTGCTGCAGCAACTTCTATACTGTCCTATGTAGAACCCTCATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACGgttagtactgctgcatgaatttt---atgttacaagttcaatagttatatgtggt-taatggcatatccaaagcatactttttttcttgatagaatgcctcctg-----------------------------------------------------------------------------------------
 || ||||||||||||||||||||||||||  |||| ||||| || |||||||||||||| |||||| | || ||||| || ||  ||||| | ||||||||||||| || |   |      |    | ||  |  ||  | | ||| || | || |||     | | | |  || || |    | || |   |     ||                                                                                            
TTCTGAGACAGTTGCTGCAGCAACTTCTATTTTGTCTTATGTTGAGCCCTCATTGGTTCTTCCATTTTTAGCTTCTCGATTCCATCTGGCCTTGGAGACGgttagtagtgttatgtattcccttaagttttggatttttgaaatttagatttagtctaagtagtttttccattcaaacatcacctgtttaggaagcatatcaaattcatatgtcaaattagaagtgtaattccttttagttgtgcttgttacattacattaatttaccttttccaaattttgtgtctagtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120528743|gb|EH256877.1|EH256877
EST:     CATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACG                         ATGACTGCTACCCACCAATTGAAAATTGCAGTTATGTCAGTGGCATTTGTT
genomic: CATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACGgttagtactg ... gcctagccagATGACTGCTACCCACCAATTGAAAATTGCAGTTATGTCAGTGGCATTTGTT
EST: gi|120531479|gb|EH259612.1|EH259612
EST:     CATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACG                         ATGACTGCTACCCACCAATTGAAAATTGCAGTTATGTCAGTGGCATTTGTT
genomic: CATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACGgttagtactg ... gcctagccagATGACTGCTACCCACCAATTGAAAATTGCAGTTATGTCAGTGGCATTTGTT