Sequence
atgc intronic sequence ATGC exonic sequenceGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccattgaagatgctatattactggcaactaaaaaatgtcactgccaatacagatatgcagattgcgcttgtatacacatatttgcctatttgaaa...
Basic information
species | Glycine max |
transcript | GLYMA18G07280.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G163193_T03 (Zea mays), 5'ss of exon 9
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccattgaagatgctatattactggcaactaaaaaatgtcactgccaatacagatatgcagattgcgcttgtatacacatatttgcctatttgaaa
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GAAGGGTAATGAAAAGGCTGTCGTTGCACGGCATGAAGTAGGTCATGCACTCGTGGGAACTGCTGTAGCGAACCTTCTTCCTGGACAGCCACGTGTTGAGgt------ttgaacttaagcaattactgatag---aacaatctgagagaagatgta---atttgacttactttttcaatgctgaatttaacag-------
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 10
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccattgaagatgctatattactggcaactaaaaaatgtcac-tgccaatacagatatgcagattgcgcttgtatacacatatttgcctatttgaaa
||| |||||||| ||||| |||||| | ||||| ||||| |||||||| || ||||| || ||||||| |||||| |||||||| | |||||||||||||| || ||| | || || || | ||| | | || || ||| | | ||| || |||||| |
AAAAGGTAGTGAGAAAGCTGTGGTTGCAAGGCATGAAGCTGGGCATGCTGTTGTTGGTACAGCTGTTGCAAGTCTTCTTTCTGGACAGTCCCGTGTTGAGgtaaagcagtgagaaccgcatgttgcttgatactcattttttacatgtgttaatgc---tctgctaatacatattgtatttttag----------------
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 5'ss of exon 10
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccattgaagatgctatattactggcaactaaaaaatgtcactgccaatacagatatgcagattgcgcttgtatacacatatttgcctatttgaaa-
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AAAAGGCAATGAGAAGGCAGTGGTCGCAAGGCATGAAGCTGGGCATGCAGTGGTTGGTACCGCTGTTGCAAATCTTCTTACTGGACAGCCACGTGTTGAGgtaaaatgcaaaaactttgtctacatttacgctcattgtttatgttgtttagtacgtgcaaatgattcaagttt---tgctcatctttgtggtgttgtcag
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 10
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccattgaagatgctatattactggcaactaaaaaatgtcactgccaatacagatatgcag--attgcgcttgtatacacatatttgcctatttgaaa--
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GCAGGGAAGTGAGAAGGCTGTTGTTGCACGGCATGAAGCTGGTCATGCAGTAGTGGGAACTGCTGTTGCTAATCTTCTTCCTGGACAGCCACGTGTTGAGgtaagttatt-aggaccttat-ttac-aataaatattttcctttactgctta-acaagtttcaaattatttaacctccctggagaatttggaagacacgtgagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305728|gb|FG995698.1|FG995698EST: TAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAG AAACTAAGTATATTGCCAAGGTCAGGAGGGGCT
genomic: TAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccatt ... ttgtcatcagAAACTAAGTATATTGCCAAGGTCAGGAGGGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaaccattgaagatgctatattactggcaactaaaaaatgtcactgccaatacagatatgcagattgcgcttgtatacacatatttgcctatttgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG