1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATACATCAACAGCAGAATCAGGATCTGAAGTTGAAGATATCACTTCTCCCAAAGCAAGTGGGAATTATACAAACCCAAGGTTGACTCCTGTCCATGAAGAagtaagtgatcatgacattggtattttgatgttgcaaaaagaaagaaaagatagataagatacaaaaatgttgcaataaaatgaaatataactactttgatgtttgtcca
species | Glycine max |
transcript | GLYMA17G37150.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAGCAAGTGGGAATTATACAAACCCAAGGTTGACTCCTGTCCATGAAGA AGCAAGATTGATTGGTAGGGCTAGTGGTTTCTCTGAGTATGATGATTATGTEST: gi|58023387|gb|CX710128.1|CX710128
genomic: AAAGCAAGTGGGAATTATACAAACCCAAGGTTGACTCCTGTCCATGAAGAagtaagtgat ... tgtttgtccaGGCAAGATTGATTGGTAGGGCTAGTGGTTTCTCTGAGTATGATGATTATGT
EST: TGTCCATGAAGA AGCAAGA-TGATTTGTAGGGGCTAGTGG-TTCTTCTGAGTATGATGATTATEST: gi|57575331|gb|CX548306.1|CX548306
genomic: TGTCCATGAAGAagtaagtgat ... tgtttgtccaGGCAAGATTGATTGGTA-GGGCTAGTGGTTTC-TCTGAGTATGATGATTAT
EST: GACTCCTGTCCATGAAGA AGCAAGATTGATTGGTAGGGCTAGTGTTTTCTCTGAGTATGATGATTATGTEST: gi|208173024|gb|GD967555.1|GD967555
genomic: GACTCCTGTCCATGAAGAagtaagtgat ... tgtttgtccaGGCAAGATTGATTGGTAGGGCTAGTGGTTTCTCTGAGTATGATGATTATGT
EST: AAAGCAAGTGGGAATTATACAAACCCAAGGTTGACTCCTGTCCATGAAGA AGCAAGATTGATT
genomic: AAAGCAAGTGGGAATTATACAAACCCAAGGTTGACTCCTGTCCATGAAGAagtaagtgat ... tgtttgtccaGGCAAGATTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACATCAACAGCAGAATCAGGATCTGAAGTTGAAGATATCACTTCTCCCAAAGCAAGTGGGAATTATACAAACCCAAGGTTGACTCCTGTCCATGAAGAagtaagtgatcatgacattggtattttgatgttgcaaaaagaaagaaaagatagataagatacaaaaatgttgcaataaaatgaaatataactactttgatgtttgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA