Sequence
atgc intronic sequence ATGC exonic sequenceGGGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaatatatataccttttgcacgagaagatttgatgatttattttattttattgacgctggaatgatcttcaatgttattgtcttaaatagataca...
Basic information
species | Glycine max |
transcript | GLYMA17G32180.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 9
GGGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaata-tatataccttttgcacgagaaga--tttgatgatttattttattttattgacgctggaatgatc--ttcaatgttat---tgtcttaaatagataca--------------------------------------------------
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GGGAGGGAAATGGTATGAGCCAGAATGGTGGAAATTTGGGGACGAAAAATCgtaagtgatagcaaatgttatatacttaaaaggaacttcggtgaaataaaaatcttcttcgatattaagctcagtggttgaaacttatgtttacttcacatgattggaacctttaaacagttatgctgtaactcatagtatttcttcattatatttag
upper sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 9
GGGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaatatatataccttttgcacgagaagatttgatgatttattttattttattgacgc-tggaatgatcttcaatgttattgtcttaaatagataca
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GGGAAGTCAATGGTATGAGCCTGAGTGGTGGAAATTTGGGGACGACAAATCgtaagtgtcttatacctcataggtcttctcgtttatgtcaagcccttgtgacct-tcgttgtgtgtactcagtttctttgtt--cgatttatttag-----
upper sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 9
GGGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaatatatataccttttgcacgagaagatttgatgatttat-tttattttattgacgctggaatgatcttcaatgttattgtcttaaatagataca---
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GGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATCgtaagtga-acttg---cttgtgtaggagaatagtgtgttatatacacctaaattatatttgtcatacattttgaaagtcttatttgcactgttgagcgtgggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15203886|gb|BI426654.1|BI426654EST: GGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATC GTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
genomic: GGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaata ... ttgtccttagGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAAAGCCATGGTATGAACCAGATTGGTGGAAATTTGGGGATGAAAAATCgtaagtaatatatataccttttgcacgagaagatttgatgatttattttattttattgacgctggaatgatcttcaatgttattgtcttaaatagataca
- - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - GGTGGA