Sequence
atgc intronic sequence ATGC exonic sequenceAGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
Basic information
species | Glycine max |
transcript | GLYMA17G08230.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G58160.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgt-tggtagat-tgattatggtgaatagttatgctgagtt-taatttataat---aagtctcctctatattttacaaaatttcataac---acttaacaccattattctgaacag--------------------------
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AACTCAGTGCTTAACCTGGAGGAGTCGGCTCTTGATGCTGATCAGGTTGAGAACCTAATTAAGTTTTGCCCAACAAGAGAAGAGATGGAGTTACTAAAGgtataagacgtgtactcctagaataatgttcaactgctttgttttccaaagtcggaagtccctagaaaaaattggggtgttctgtgatctagcttttgtatgttcttttga-catttcttcatttcatactcggtttgtag
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g00160.t01 (Vitis vinifera), 5'ss of exon 7
AGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgt------------tggtagattgatta--tggtgaatagttatgctgagtttaat-ttataataagtctcctct------atattttacaaaatttcataacacttaacaccattattctgaacag---------------------------------------------
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AATTCAGTGCTTGCTTTAGAGGATTCAGCTTTAGATGTTGATCAGGTTGATAACCTCATAAAGTTTTGTCCAACAAAAGACGAGATCGAGCTACTTAAGgtatagagttatgttgttgaattaatttctttattcactattatatgcattgtgacattagcatcagtgttttttcttgaaatattatttcataccctttgatatttaaatctagttcctttatgaaaatgaccgtttttagccatgatcaaacttttatttccatgtttag
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ15040 (Selaginella moellendorffii), 5'ss of exon 7
AGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
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AAAGCAATACTAGCGTTGGATGGGACAGTACTGGATGTAGATCAGGTTGATAATCTGATCAAGTTTTGTCCAACAAAGGAGGAGATGGAAACGCTCAAGgtt-------ttatttccagatatgatcttgcca--tctaacttacacgctggtggttttgcag------------------------------------------
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ38303 (Selaginella moellendorffii), 5'ss of exon 1
AGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
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------------------------ACAGTACTGGATGTAGATCAGGTTGATAATCTGATCAAGTTTTGTCCAACAAAGGAGGAGATGGAAACGCTCAAGgtt-------ttatttccagatatgatcttgcca--tctaacttacgctggtggttttgcag--------------------------------------------
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ37653 (Selaginella moellendorffii), 5'ss of exon 7
AGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
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AAAGCAATACTAGCGTTGGATGGGGCAGTACTGGATGTAGATCAGGTTGATAATCTGATCAAGTTTTGTCCAACAAAGGAGGAGATGGAAACGCTCAAGgtt-------ttatttccagatatgatcttgcca--tctaacttacacgctggtggttttgcag------------------------------------------
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ38305 (Selaginella moellendorffii), 5'ss of exon 4
AGCTCAGTGT-TAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
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CACTCAGAAAGCAATACTATGGGA--CAGTACTGGATGTAGATCAGGTTGATAATCTGATCAAGTTTTGTCCAACAAAGGAGGAGATGGAAACGCTCAAGgtt-------ttatttccagatatgatcttgcca--tctaacttatgctggtggttttgcag--------------------------------------------
upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ14916 (Selaginella moellendorffii), 5'ss of exon 4
AGCTCAGTGT-TAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
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CACTCAGAAAGCAATACTATGGGA--CAGTACTGGATGTAGATCAGGTTGATAATCTGATCAAGTTTTGTCCAACAAAGGAGGAGATGGAAACGCTCAAGgtt-------ttatttccagatatgatcttgcca--tctaacttacgctggtggttttgcag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16349026|gb|BI974621.1|BI974621EST: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAG GGTTATAATGGGGAAAAGGAGAAGTTGGGAAGATGCGAACAG
genomic: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagat ... ttctgaacagGGTTATAATGGGGAAAAGGAGAAGTTGGGAAGATGCGAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTCAGTGTTAGCACTGGAGGAGTCAGCACTCGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggtagattgattatggtgaatagttatgctgagtttaatttataataagtctcctctatattttacaaaatttcataacacttaacaccattattctgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA