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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGCATACGAGATTTCCTCCCAAGATGGGAGCTGCTATCTTATTTTTGCTTGCTACCAATATTCGAATGGCTTTGTATATGAGTTTGGTTCATCGGgtctctctctccctctctcctttacctggactggccttgctattatacacgcaatttaggatatagagattattaatttttcttgtcactgtttgttctttcaatttgatgtttatatatcaaaatcttctgtaaaaatctagaaataaatatttaatatattctttattttctaatag

Basic information

species Glycine max
transcript GLYMA17G07620.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G14850.1 (Arabidopsis thaliana), 5'ss of exon 6
AAAAAAGCATACGAGATTTCCTCCCAAGATGGGAGCTGCTATCTTATTTTTGCTTGCTACCAATATTCGAATGGCTTTGTATATGAGTTTGGTTCATCGGgtctctctctccctctctcctttacctggactggccttgctattatacacgcaatttaggatatagagattattaatttttcttgtcactgtttgttctttcaatttgatgtttatatatcaaaatcttctgtaaaaatctagaaataaatatttaatatattctttattttctaatag
| | || ||||| |  |   |||||||  |  ||  | |  |||  |||||||||||||||||||||| ||||||  | || ||||||||  | || | |||        |  |  ||      |     || |  || | | | ||| | | || |    |   |  |  |   | |||| ||||  |     |                                                                                    
ACAGAACCATACCAAGTGGTCTCCCAAACTAAGACTTTCAGTCTATTTTTTGCTTGCTACCAATATTCCAATGGCACTATACATGAGTTTATTCCACCAGgtaaaaacaccagtaccttgagggctctatctagt-ttccgagtttactctctatctctatttgtgctaaaaaggaattttgttgtttccaacag------------------------------------------------------------------------------------

upper sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0037g01100.t01 (Vitis vinifera), 5'ss of exon 8
AAAAAAGCATACGAGATTTCCTCCCAAGATGGGAGCTGCTATCTTATTTTTGCTTGCTACCAATATTCGAATGGCTTTGTATATGAGTTTGGTTCATCGGgtctctctctccctctctcctttacctggactggccttgctattatacacgcaatttaggatatagagattattaatttttcttgtcactgtttgttctttcaatttgatgtttatatatcaaaatcttctgtaaaaatctagaaataaatatttaatatattctttattttctaatag
 || |  |||   | ||  ||| | ||  || ||   || ||||| || |||||| |||| || |||| |||||||||||||||||| ||| |||||| ||| | | |   |||   |  |  |    || | | ||  || ||   | | |   |   | |  | ||||||  ||| | |    |  |    |  |   |||                                                                            
CAACAGTCATGTCAAATGCCCTTCAAAAGTGCGATTGGCCATCTTTTTCTTGCTTTCTACAAACATTCCAATGGCTTTGTATATGAGCTTGTTTCATCAGgtatattt--tccttcttgttgaattcagagttgtctacctttttgcctctcttctacagcttaacagattaa-aatgtctgaaattgcatccttgttaatca----------------------------------------------------------------------------