Sequence
atgc intronic sequence ATGC exonic sequenceTGTAAGGGCAATAGTTGCTTTGAACCTTCATAGCTATGGAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGgtatgttgcctaacataataactcattgatgtgatgatatgaaagcattcaatctcatgttccttctatttttttaaaaaaatctagggatacatattgtgtatagctgaatataagctaactaacttgatgaaactgttagtgttattcaaatttaatcatgattgactgaatggacttattggtgtacttccag
Basic information
species | Glycine max |
transcript | GLYMA17G07480.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G30340.1 (Arabidopsis thaliana), 5'ss of exon 7
TGTAAGGGCAATAGTTGCTTTGAACCTTCATAGCTATGGAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGgtatgttgcctaacataataactcattga-tgtgatgatatgaaagcattcaatctcatgttccttctatttttttaaaaaaatctagggatacatattgtgtatagctgaatataagctaactaacttgatgaaactgttagtgttattcaaatttaatcatgattgactgaatggacttattggtgtacttccag
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CGTAAGATCTATTGTGGTGTTGAATCTTTATAACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATATTTAGAGAAGgta-----------ataatgttttattcagtacactaatcttagg---ttttattgctttctctacaagctttaacagaacgtgttcgggttttataacag------------------------------------------------------------------------------------------------
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G57690.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTAAGGGCAATAGTTGCTTTGAACCTTCATAGCTATGGAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGgtatgttgcctaacataataactcattgatgtgatgatatgaaagcattcaatctcatgttccttctatttttttaaaaaaatctagggatacatattgtgtatagctgaatataagctaactaacttgatgaaactgttagtgttattcaaatttaatcatgattgactgaatggacttattggtgtacttccag
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TGTAAGAGCAGTTGTTGCATTGAATCTACATAGCTATGGAAGTGGAAGAAACCCTTGGGGAAATCTCAAACAAGATTATCTTGAAAAAgta---------aaacaa-agctcattttttcgtcacttcacaaatctacttatcaattctccttct----tattaacggttgcttgtgttgtacgtaacag----------------------------------------------------------------------------------------------
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 5'ss of exon 10
TGTAAGGGCAATAGTTGCTTTGAACCTTCATAGCTATGGAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGgtatgtt-gcctaacataataactcattgatgtgatgatatgaaagcattcaatctcatgttccttctatttttttaaaaaaatctagggatacatattgtgtatagctgaatataagctaactaacttgatgaaactgttagtgttattcaaatttaatcatgattgactgaatggacttattggtgtacttccag
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TGTGAGGGCAATAGTTGCTTTGAATCTTCATAGCTATGGAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAGgtatgtttaacttgtcaaatgacacagtggtgcttacatatgt-----ttcaatt--atgt-------atatgtgtgtatgtgtgtgtattttccttttgtttgtagtcaactg-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254319478|gb|GR830729.1|GR830729EST: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAG AGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAAGGGCAATAGTTGCTTTGAACCTTCATAGCTATGGAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGgtatgttgcctaacataataactcattgatgtgatgatatgaaagcattcaatctcatgttccttctatttttttaaaaaaatctagggatacatattgtgtatagctgaatataagctaactaacttgatgaaactgttagtgttattcaaatttaatcatgattgactgaatggacttattggtgtacttccag
- - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGAAA