Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaagagaatttgtgacttattgttttcttgtatttttgctgttgttgctgcttccatcag
Basic information
species | Glycine max |
transcript | GLYMA17G06120.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g36800.1 (Oryza sativa), 5'ss of exon 10
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcc-tgatattttgttgtttacttacagtattttc------agtctttcataaagagaat-ttgtgacttattgttttcttgtatttttgctgttgttgctgcttc-catcag
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GTTGAATATTCTTGCTGAGCTCCTCTGTTTTGGTGATCGTGAATTCTACAAGGACTGGTGGAATGCCAAAACAGTTGAAGAGgtgaaagacctgttaataatacatgcatgtttttttaaaaaaaattctgagagaactctggatagagctgacattgtgattttccatgcactt-catatgggatgatctttcgggatggcctcag
upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 10
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGA--AGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaagagaatttgtgact-tattgttttcttgtatttttgctgttgttgctgcttccatcag------------------
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GTTAAGTATACTTGCTGAGATTCTTCGATTTGGTGACCGTGAATTCTACAAAGATTGGTGGAATGCAAAAACAATTGATGAGgtgaaagacaatagttttcaagct--atcatttgcttcct---ttctcaatctaaaagaagttaggtaaacagctctaacattctgtgtgatgtttgctcctgctacatgtgcggtcgtacttggatgggatctcag
upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G169089_T01 (Zea mays), 5'ss of exon 10
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaag--agaatttgtgac-ttattgttttcttgtatttt-tgctgttgttgctgcttccatcag
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GCTGAACATTGTAGCTGAACTCCTCTGTTTCGGTGACCGTGAATTCTATAAGGACTGGTGGAATGCCAAAACTGTTGAAGAGgtgagatgcctgt--taaaattgagttcgtttcttttga-agtgagaactttaaataggactgacatcaattatattctcatgtacttaaatgtgatggtattttggggctttacctcag
upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 10
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaagagaatttgtga--cttattgttttcttgtatttttgctgttgttgctgcttccatcag-------------------
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GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaagagaatttgtgacttattgttttcttgtatttttgctgttgttgctgcttccatcag
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GTTAAACATATTGGCAGAGCTTCTCTGCTTCGGGGATCGTGAATTCTACAAAGATTGGTGGAATGCAAAAAGTGTGGGAGATgtgagctattttactcaaaagaaaacttatgatttttaatgttgtcgttgtttt-----tgggtcatctaactaaccaaattcatgtattc--actgt-----cttcctttatcag
upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 10
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttaca--gtattttcagtctttcataaagagaatttg-tgacttattgttttcttgtatttt-tgctgttgttgctgcttcc-atcag
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GTTAAATATACTTGCTGAGCTTCTTCGTTTTGGGGACCGTGAGTTCTATAAAGATTGGTGGAATGCAAAAACAGTTGAGGAGgtaggttttttattttc-tgtgaagtgttttccttaagttgtgtttcaagccatccatttctaacttctgcttgactattatttgtgtttgttgtatgcatttcctggttctacggatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403271|gb|EV273081.1|EV273081EST: AACTGTCGAAGAT TATTGGAGGATGTGGAATATG
genomic: AACTGTCGAAGATgcaagttatt ... cttccatcagTATTGGAGGATGTGGAATATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaagagaatttgtgacttattgttttcttgtatttttgctgttgttgctgcttccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA