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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataatatttttcccagagcttttacctttttagttcttcatatccatctgaaatactttttcctggctatataaatttgtgcttgtgtagtata...

Basic information

species Glycine max
transcript GLYMA17G05530.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05530.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 5'ss of exon 10
AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataatattttt---cccagagcttttacctttttagttct-tcatatccatctgaaatactttttcctggctatataaat-ttgtgcttgtgtagtata
|||||||  |||| |   | ||||||||  |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||  |  | ||   | || ||   | ||  | |||||| | | ||||  || | | |||          |   ||||| | || || |    | |    
AAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattcttctcttttactcatagtcatgacaatattagttatattatatatatat-atatataaccataaagtggtataagtattatgttgtctttg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285660|gb|BI469551.1|BI469551
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|208267978|gb|GE072949.1|GE072949
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCC
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCC
EST: gi|10709102|gb|BF008826.1|BF008826
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|163922870|gb|EH038800.1|EH038800
EST:     TCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: TCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|163921601|gb|EH038699.1|EH038699
EST:     TCCTC-ATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: TCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|6454389|gb|AW185072.1|AW185072
EST:     TCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: TCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|13312169|gb|BG405829.1|BG405829
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|193493686|gb|FK458868.1|FK458868
EST:     ATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|26058248|gb|CA801162.1|CA801162
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|9563980|gb|BE473489.1|BE473489
EST:     CTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: CTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|208146424|gb|GD946261.1|GD946261
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|6072359|gb|AW101746.1|AW101746
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|24136117|gb|BU926627.1|BU926627
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|193488603|gb|FK453584.1|FK453584
EST:     ATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|193687566|gb|FK629225.1|FK629225
EST:     ATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|207745466|gb|GD714028.1|GD714028
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|208082894|gb|GD882160.1|GD882160
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|208309506|gb|GE103368.1|GE103368
EST:     ATACCACTGCTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: ATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|208189187|gb|GD984403.1|GD984403
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|208325993|gb|GE119703.1|GE119703
EST:     AGAGGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACAATTTTAACATTCTCTTAAT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACA-TTTT--CATTCTCTTAAT
EST: gi|193653976|gb|FK596964.1|FK596964
EST:     ATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|21637806|gb|BM107961.1|BM107961
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: gi|193716792|gb|FK650752.1|FK650752
EST:     ATGTTGGCAATCTTGCTCCAGAG                         GTTACTTCTAGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAAC
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCT-GTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAAC