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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatttggatctatcttatgtagctatgcatctgtgttgtttgttttcaatgtaattctcattaacattttcatattgtttaaaagttaggagtt...

Basic information

species Glycine max
transcript GLYMA17G03990.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7926145|gb|AW832171.1|AW832171
EST:     GGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|4396496|gb|AI495493.1|AI495493
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTNGGTGACCTTATGAACG
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACG
EST: gi|14205721|gb|BG839399.1|BG839399
EST:     GAKSCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|41145398|gb|CK605609.1|CK605609
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|14205748|gb|BG839426.1|BG839426
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|58019629|gb|CX706371.1|CX706371
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|15203268|gb|BI426036.1|BI426036
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|26048836|gb|CA785289.1|CA785289
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|207698661|gb|GD679290.1|GD679290
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
EST: gi|58019308|gb|CX706050.1|CX706050
EST:     GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAG                         TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA
genomic: GAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatt ... ttattttcagTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGgtgagtcatttggatctatcttatgtagctatgcatctgtgttgtttgttttcaatgtaattctcattaacattttcatattgtttaaaagttaggagtt

- - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGGATG