Sequence
atgc intronic sequence ATGC exonic sequenceATGATCCAGAGGTTCCTTTTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGgtatggtatcctatctttttatttttgtagagctgcaaagtaggtagatctgtactctgtagatgtggtagaaaattttaccttataatattttacctattttctcttgtag
Basic information
species | Glycine max |
transcript | GLYMA17G03570.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G06670.1 (Arabidopsis thaliana), 5'ss of exon 10
ATGATCCAGAGGTTCCTTTTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGgtatggtatcctatctttttatttttgtagagctgcaaagtaggtagatctgtactctgtagatgtggtagaaaattttaccttataatattttacctattttctcttgtag------
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ATGATCCTGGTGTTCCTCACTCTCAGCATCACCGGAATTTTCTGAAGGAGCATGTTGTTTTTAAGGAGgta----acacaatcttgcctatgctattgattt------tacgt-gattcagacccagttaaca------aagactgtac-ttaggaaatctttgagacttattcttgtgactagaa
upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 5'ss of exon 10
ATGATCCAGAGGTTCCTTTTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGgtatggtat-----cctatctttttatttttgtagagctgcaaagtaggtag----atctgtactctgtagatgtggtagaaaattttaccttataatattttacctattttctcttgtag------
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ATGATCCTGGTGTTCCTCACTCTCAGCATCACCGGAATTTTCTGAAGGAGCATGTTGTTTTTAAGGAGgtaacacaatcttgcctatgctattgattttacgtgattcagacccagttaacaaagactgtacttaggaaatctttgagacttattcttgtgactagaactgaa-taagctcattagaaatattag
upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 10
ATGATCCAGAGGTTCCTTTTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGgtatggtatcctatcttttta------tttttgtagagctgcaaagtagg---tagatctgtactctgtag-atgtggtagaaaat---tttacctta--taatattttacctattttctcttgtag--------------------------------------------------------
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ATGATCCTGACATTCTCCATGCCCAACATCATCGTAATTTCCTAAAAGAGCATGTGGTTTTTAAGGAGgtaatgtatcattacttggtagttgtttcttcatttttcctttaggtgggagttaggattggaggggggaggaggtgggaggtagtgttttttctttagtcaagaggtgcattgtccctttatgttgcatttctgtgggaatctttgttattcatggttattatttattttgggtgtgcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207748986|gb|GD719535.1|GD719535EST: TTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAG GCCATACCTATAAAAGATCCCGTTGTGTTGTCAAAGATACATCAGACATAT
genomic: TTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGgtatggtatc ... tctcttgtagGCCATACCTATAAAAGATCCCGTTGTGTTGTCAAAGATACATCAGACATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATCCAGAGGTTCCTTTTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGgtatggtatcctatctttttatttttgtagagctgcaaagtaggtagatctgtactctgtagatgtggtagaaaattttaccttataatattttacctattttctcttgtag
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG