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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTGACTACCTCTTCTATATTGATATTGAAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGgtctgcccattatctcatcaactcaagtttaatattttgttgcttatgggagtcacaaattttatcagtattttttctgaatctataaaatttcttaatg...

Basic information

species Glycine max
transcript GLYMA17G01610.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01610.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0116g01670.t01 (Vitis vinifera), 5'ss of exon 10
GTACTTTGACTACCTCTTCTATATTGATATTGAAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGgtctgcccattatctcatcaactcaagtttaatattttgttgcttatgggagtcacaaatttta-tcagtattttttctgaatctataaaatttcttaatg
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GTATTTTGATTACCTTTTCTATATCGACTTTGAAGCTTCTATGGCAGAGCCTCGTGCTCAATATGCTCTGGGTCACCTGCAGgtcagtgctttagttcctatttggggaaatagttcctaaaaccgttttctaacccaaaacataagtttggcaaacttctgacacgatacaatttttgaaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335625|gb|CO979491.1|CO979491
EST:     AAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAG                         GAATTTGCTAGATTTCTTCGTGTTCTTGGTTGTTATCCTATGGATACAGTA
genomic: AAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGgtctgcccat ... tccatttcagGAATTTGCTAGATTTCTTCGTGTTCTTGGTTGTTATCCTATGGATACAGTA