1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCAACTCCATTTCTAATTGTACTCCCAGTACTGACGATATGGTTCCATATATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaattaatcattctgatggctaataatcctacatcacacgtttgtgaccttgattttccaagttgcatctatgctagtactacgttcatattaccaaacttataaacaacctaaaccttcatcacacgtttcctcgctcattgaattggtatgctgctttttgtaaaattgtaaacag
species | Glycine max |
transcript | GLYMA17G01400.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TATACTGCAGAGGACGTTTCGAACCTGCGTGTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|31473253|gb|CD415641.1|CD415641
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|58021916|gb|CX708657.1|CX708657
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|51338481|gb|CO982347.1|CO982347
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|10710003|gb|BF009727.1|BF009727
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|193673695|gb|FK616380.1|FK616380
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATEST: gi|9565742|gb|BE475251.1|BE475251
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACAT
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|10846371|gb|BF069280.1|BF069280
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|193451337|gb|FK420557.1|FK420557
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG GAAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAA
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagG-AAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAACTCCATTTCTAATTGTACTCCCAGTACTGACGATATGGTTCCATATATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaattaatcattctgatggctaataatcctacatcacacgtttgtgaccttgattttccaagttgcatctatgctagtactacgttcatattaccaaacttataaacaacctaaaccttcatcacacgtttcctcgctcattgaattggtatgctgctttttgtaaaattgtaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG