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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataatcttcttttttctagtactggctttgaaaattgttaatttgttcccttgttgttttcatttgtgctttgcttgtgctcatggaggttcaaatctgaatttacttttacttgtag

Basic information

species Glycine max
transcript GLYMA17G01310.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01310.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 10
GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataatcttcttttttctagtactggctttgaaaattgttaatttgttcccttgttgttttcatttgtgctttgcttgtgctcatggaggttcaaatctgaatttacttttacttgtag
| || || ||||| |||||||||||||||||||||||||||||| | |  |||           || | | | |   ||  | | ||  |  ||    |      |  ||||| |   |      |  |   || || |       |||   |  ||   ||      || ||
GTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTgtagg---------ttctatatggagatg--tgtcaatttgctttgcctaacttttgtttgttctacctaacatatctccactgatcttcacttcccaatgatacatcctctcactactgcag

upper sequence: GLYMA17G01310.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 11
GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataatcttctttt----ttctagtactggctttgaaaattgttaat------ttgttccctt-gttgttttcatttgtgctttgcttgtgct------catggaggttcaa-atctgaatttactt----ttacttgtag--------------------------------
|||| ||||||||||||||||||||||| ||  | |||||||||||||||||| ||| |  |  ||||    ||    | |||    | ||| ||  | |        |||||  || | ||| |||  || |  | | ||  |  |      |||    ||| |  || |||  ||   |    | |  || ||                                
GAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATGgtatcatgaaatcattttcatgtttccatcctgttactaaaatttaatcaagcactgctgttcttttagatgtcttcgcttatcttcttctcctatttctccccatatctgttgattatttgaggttctgtgaaatcaaatgcagtttttagtaacttgttgtgtactcgttctcag