1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTTGCATTTATTGTTGATTGCAAAGAACCCAAGGCTTGTACTGTTCTACTAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctattggcatggtctaaagatttagttctgatcatactgctttctgagaacttattttcttgacag
species | Glycine max |
transcript | GLYMA16G33380.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCTEST: gi|15286272|gb|BI470163.1|BI470163
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatt ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTEST: gi|192305641|gb|FG998019.1|FG998019
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatt ... ttcttgacagGATGCCATGTCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCTEST: gi|207715927|gb|GD699347.1|GD699347
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatt ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCT
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatt ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCATTTATTGTTGATTGCAAAGAACCCAAGGCTTGTACTGTTCTACTAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctattggcatggtctaaagatttagttctgatcatactgctttctgagaacttattttcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA