1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAAAACAAAGAAGGTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctttgtctactgaatctaatttagtatcttataacatatggctgattagtttctattcttacag
species | Glycine max |
transcript | GLYMA16G32960.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: -TCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG -TTGTAATTGG-ATGGATGTTGCTGCTTCAGAATTT-ACGATA-CA-GGATEST: gi|254317870|gb|GR832038.1|GR832038
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
EST: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGATEST: gi|16996761|gb|BM086133.1|BM086133
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
EST: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGATEST: gi|24135559|gb|BU926069.1|BU926069
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
EST: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGATEST: gi|58021375|gb|CX708116.1|CX708116
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
EST: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGATEST: gi|254343118|gb|GR859280.1|GR859280
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
EST: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG -TTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGEST: gi|15812359|gb|BI784634.1|BI784634
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACG
EST: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAG GTTGTNAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAEST: gi|254329396|gb|GR838949.1|GR838949
genomic: GTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGT-AATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGA
EST: TGCTAAAGCTGGTTACACTGGAAAG GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
genomic: TGCTAAAGCTGGTTACACTGGAAAGgttgaatctt ... attcttacagGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAACAAAGAAGGTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatctttgtctactgaatctaatttagtatcttataacatatggctgattagtttctattcttacag
- - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGCTG