1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTACGTTGAAAAATGCAAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattagattctcaacccttgaagcaatctaatttactcactatccttgtttttttcatcctggaggttgagttggttaattgcatcctgaaacttc...
species | Glycine max |
transcript | GLYMA16G28310.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|26269057|gb|CA820120.1|CA820120
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|15204366|gb|BI427134.1|BI427134
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: GTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|31457542|gb|CD399570.1|CD399570
genomic: GTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|31473114|gb|CD415142.1|CD415142
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|31469604|gb|CD411632.1|CD411632
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|151398810|gb|EV268681.1|EV268681
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|7692550|gb|AW760653.1|AW760653
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTAEST: gi|192304054|gb|FG993884.1|FG993884
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
EST: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAG CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
genomic: AAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattag ... acatgaacagCATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACGTTGAAAAATGCAAGTTTCCTGAAGATGGTTCATCACCAAAGTCTCTAAGATATATTGGAAGgtatcattagattctcaacccttgaagcaatctaatttactcactatccttgtttttttcatcctggaggttgagttggttaattgcatcctgaaacttc
- - - - - - - - - - - CTGAAG
- - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG