Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatcttgctcttgctttctccttcaattcctcctcaaatgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag

Basic information

species Glycine max
transcript GLYMA16G27050.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g07200.1 (Oryza sativa), 5'ss of exon 10
ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatcttgctcttgctttctccttcaattcctcctcaaatgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag
||||||||||   | || |||||||| || ||||| |||||||| ||||  ||||||||||||||||| || ||   ||| |  ||    || |||    ||| |   ||   ||        ||||   | |||            |||    | |  || | |||    | | || ||   |    |  | ||                                              
ACAATTGACAAGCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAAGGCCGTGGAAGGgtaccgatt---cttttggcccctcttatgataattcta-----acatagaaagctt------------aatgccgaaaaaaaaaacatggtttaacctgaatttatggcttttgcag---------------------------------------------

upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G08080.3 (Arabidopsis thaliana), 5'ss of exon 11
ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatcttgctcttgctttctccttcaattcctcctcaaatgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag
|| |||||   ||| |||||||||||| | || ||||| || |||||||| || |||||||| |||||| |||| |||||||      | |  ||   || |    |||     | |   |    |   ||  || |||| |  || |  | ||| |  |   | | ||   ||   |     |   ||| | | |                                             
ACTATTGATGAATTGATTGAAACTGGAAACAGCGAACAGATCTTCCAGAAAGCGATTCAGGAGCAAGGAAGAGGACAGgttcgagctattccgtttaattgtgaagcaaaatg-ctttggacatgttgacattttattatgt-gtcaagaaataatacaacattaaatcttgcaaaaatgttgaatgttcctcccag--------------------------------------------

upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G03800.1 (Arabidopsis thaliana), 5'ss of exon 10
ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatct-tgctcttgctttctcctt--caattcctcctcaaatgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag
    |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||   ||| ||||||||||| ||||||  ||||| || ||  ||  ||  ||   |||  |  |  | |   |||  |   ||  |  |  | | ||                                                                                             
----TTGATAGATTGATTGAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAGgttggtatctatgttccggcactcatctgtgcaacacgacaactataacatgcttttctactggttctgtgcag--------------------------------------------------------------------------------------------

upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0032g00440.t01 (Vitis vinifera), 5'ss of exon 10
ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatcttgctcttgctttctccttcaattcctcctcaaatgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag
|||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||  | ||||  ||||  | |  |||  | | | | |||       | ||||| || |  |   ||     |   |  | ||| | ||  |   |   ||                                                              
ACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAAGCAATTCAGGAACAAGGACGAGGCCAGgtttgtctctttttctttttcttccctgaactcctttctct----tttcttcaaattctcttggaatggtggaaagattt-aatgttatataaaaaataaagaag----------------------------------------------------------

upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ08209 (Selaginella moellendorffii), 5'ss of exon 7
ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgtt--catatcttgctcttgctttctccttcaattcctcctcaaatgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag
||  ||||||  || || ||||||||||| |||||   |||||| || |||||| ||||||||||||| |||||||| ||   ||    ||| || ||| || || ||      || ||   ||   ||| |    | |                                                                                                        
ACTGTTGACAAGTTGATCGAAACTGGAGACAGTGAGACAATTTTTCAAAAGGCTGTTCAGGAACAAGGCCGAGGCCAAgtaagcactctttgatcctgcattttctttg-----ctgctagcatcactatcctcgctctag------------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ12216 (Selaginella moellendorffii), 5'ss of exon 7
ACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgtt--catatcttgctcttgctttctccttcaattcctcctcaa-atgcatattcaactttttatattatccaatattaacatgaatatcattcactcatctaaacccaccattcatacaaacctaccttgccattgtacactcatagattgagttatctttgtag
||  ||||||  || || ||||||||||| |||||   |||||| || |||||| ||||||||||||| |||||||| ||   ||    ||| || ||| || || ||    |   | |||  || |    || |                                                                                                             
ACTGTTGACAAGTTGATCGAAACTGGAGACAGTGAGACAATTTTTCAAAAGGCTGTTCAGGAACAAGGCCGAGGCCAAgtaagcactctttgatcctgcgttttcttttctgttagcatcactatcctcgctctag------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411949|gb|EV281760.1|EV281760
EST:     ATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAG                         ATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGAT
genomic: ATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatct ... atctttgtagATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGAT
EST: gi|254315172|gb|GR830165.1|GR830165
EST:     ATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAG                         ATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGAT
genomic: ATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatct ... atctttgtagATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGAT
EST: gi|192324538|gb|FK016789.1|FK016789
EST:     TAGTGAACAAATTTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAG                         ATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGAT
genomic: TAGTGAACAAATTTT-CCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGgttcatatct ... atctttgtagATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGAT