Sequence
atgc intronic sequence ATGC exonic sequenceTTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcag
Basic information
species | Glycine max |
transcript | GLYMA16G26550.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G477146_T02 (Zea mays), 5'ss of exon 9
TTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcag
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GTCTAACATGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTGGTTCACATATTCGATCGTTCTCCTGTTTCTGTGTACTGCTGGATTTTGGgtatggctaacc------taatgtgttgttcctgaggctactccgctgctgctgttttcctacgtcgttgtctaattcaagttc-cgtatgccttatgtgacag---------------------------
upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 9
TTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcag
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CTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGGgtaaaaaaaaacctcaagcta-------ctgaaatattttggtgctttgttgtgccgttgagactatatag-ttactgaagtaaaaacgtctttcatgtgc-ttctgttgcag------------------
upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 9
TTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcag
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CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGGgtaaagatctcttgtaacttataaccttctctttgcatgttaaaattaacttttggttgttaaaattaatatgctgagaagctccttgataggaattgaa-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58021111|gb|CX707853.1|CX707853EST: GGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGG ATGACCAGGTTGAATGAAGGACTGTCATTGTTTGATGCAATTCTTATTGTT
genomic: GGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggcttt ... aattgtgcagATGACCAGGTTGAATGAAGGACTGTCATTGTTTGATGCAATTCTTATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA