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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGgttagtttttcaattacacaagtttgagtttttctaccatagtgttcttgttctttgccatcttgtactaatgcatttaatatgttttacttcacag

Basic information

species Glycine max
transcript GLYMA16G26360.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 10
CCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGgttagtttttcaat-tacacaagtttgagtttttctaccatagtgttcttgttctttg-ccatcttgtactaatgcatttaatatgttttacttcacag
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CCAGAAAAGAAAAATCCAGGTTTAACTCCGATGGACTGGGTCAAGTTCATTGCGTCTGCTGTAGTTGGGCTGgtcagatatttgatatccataatatttaatatgt-----agatggtttttgtctttcatccatcttgttc------actta-catgtctttctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193514355|gb|FK467885.1|FK467885
EST:     TGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTG                         GTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATT
genomic: TGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGgttagttttt ... tacttcacagGTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATT